Your message dated Tue, 03 Dec 2019 11:19:23 +0000 with message-id <e1ic6dd-000fiu...@fasolo.debian.org> and subject line Bug#945735: fixed in samtools 1.9-6 has caused the Debian Bug report #945735, regarding samtools: Python2 removal in sid/bullseye to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 945735: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945735 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: samtools Version: 1.9-5 Severity: normal Tags: sid bullseye User: debian-pyt...@lists.debian.org Usertags: py2removal Python2 becomes end-of-live upstream, and Debian aims to remove Python2 from the distribution, as discussed in https://lists.debian.org/debian-python/2019/07/msg00080.html Your package either build-depends, depends on Python2, or uses Python2 in the autopkg tests (the specific reason can be found searching this source package in https://people.debian.org/~morph/mass-bug-py2removal_take3.txt ). Please stop using Python2, and fix this issue by one of the following actions. - Convert your Package to Python3. This is the preferred option. In case you are providing a Python module foo, please consider dropping the python-foo package, and only build a python3-foo package. Please don't drop Python2 modules, which still have reverse dependencies, just document them. This is the preferred option. - If the package is dead upstream, cannot be converted or maintained in Debian, it should be removed from the distribution. If the package still has reverse dependencies, raise the severity to "serious" and document the reverse dependencies with the BTS affects command. If the package has no reverse dependencies, confirm that the package can be removed, reassign this issue to ftp.debian.org, make sure that the bug priority is set to normal and retitle the issue to "RM: PKG -- removal triggered by the Python2 removal". - If the package has still many users (popcon >= 300), or is needed to build another package which cannot be removed, document that by adding the "py2keep" user tag (not replacing the py2remove tag), using the debian-pyt...@lists.debian.org user. Also any dependencies on an unversioned python package (python, python-dev) must not be used, same with the python shebang. These have to be replaced by python2/python2.7 dependencies and shebang. This is the least preferred option. If there are questions, please refer to the wiki page for the removal: https://wiki.debian.org/Python/2Removal, or ask for help on IRC #debian-python, or the debian-pyt...@lists.debian.org mailing list.
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--- Begin Message ---Source: samtools Source-Version: 1.9-6 We believe that the bug you reported is fixed in the latest version of samtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 945...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated samtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 03 Dec 2019 11:51:08 +0100 Source: samtools Binary: samtools samtools-test Architecture: source Version: 1.9-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: samtools - processing sequence alignments in SAM, BAM and CRAM formats samtools-test - test files for the samtools package Closes: 945735 Changes: samtools (1.9-6) unstable; urgency=medium . * Port Python2 script to Python3 using 2to3 Closes: #945735 * Standards-Version: 4.4.1 * Set fields Upstream-Name in debian/copyright. * Set upstream metadata fields: Repository-Browse. * Remove obsolete fields Name from debian/upstream/metadata. Checksums-Sha1: 976e2b4f0a3baed35d7ce977912dfab3cbd30d07 2469 samtools_1.9-6.dsc 2deb3ab77f6a1c4a5d47da31ce4437fb2f559e68 21168 samtools_1.9-6.debian.tar.xz Checksums-Sha256: 4ab231ff424fcb44514538f200edd59a946af3d8f4c66f3667bf4e95fa163326 2469 samtools_1.9-6.dsc 67c757d42d5f26f355fbdf98a952aac6de75dca8df3e1cb797b1df3a50c80983 21168 samtools_1.9-6.debian.tar.xz Files: 4c9e37348b12e5de9a18bfb84a51bbcd 2469 science optional samtools_1.9-6.dsc ae0b3fb068386c6d7ac56b596c48087c 21168 science optional samtools_1.9-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl3mP7YRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF2hg/+MWFumLiqDYN0sLaGhjApSdtnRpZYIINM npUATWTTcbst0jlXoL9fb4uKwfIZ20F5mfe2lmLalZn8v2P7GD+hMf3OZz90nwJL vcHeUX1d+kEJFfLeZ+c7MK3rRkiTCoatp206NSrBgG5Z4xj588VM3xwhVg9ENSN1 Bc07mo6ai+tbXLCp+zGLkiM17mRGxTuMcx/STRbOaRTUOnT+CVcoGeVswTUeS7PX 8ZMlyz7arTLpUqL+KfugH4gNrEegSUJTt85/A2ZesDnseiblRJzYIinY5KYHwKdT heowNcmiUDb2nqqImq7r9aYx7ef4wlKtTpAcSeqQhXuU7/M/qS6v/Kl4Ji/UKp+b CuGaYs/7Q0o4NB3kCAPWLNSBx3KxXdar6pks+HlOGyH/UKGQP2Glcrg1rr0TMlZP RetDO9A5SdGnRRHs1YZvjj7KQbMwdiTg+XpZLrCP1kW6Nte9iieFQzCUG8HMAMXS 7nBOhbZtKqADodVyQ23noDTjCY/gBH8NV2RyXElombdPqbGNkM3ulUYIZl6fCFZY WSuM8IGvoixTVwaOYxPoQVrTNPQILm4K6JPFA9ubIOBTl2QedQBSZX5kKxWN7bSR pDrZ08LhGX4BFrXAFtHVmssiAk6UrkNU88YyeXGVcZ3sDdpHUyxtOP5rdoMirgvp fT3A9UkHHhw= =EQzI -----END PGP SIGNATURE-----
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