Your message dated Thu, 05 Dec 2019 11:49:13 +0000
with message-id <[email protected]>
and subject line Bug#936199: fixed in bedtools 2.29.0+dfsg-2
has caused the Debian Bug report #936199,
regarding bedtools: Python2 removal in sid/bullseye
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
936199: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=936199
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:bedtools
Version: 2.28.0+dfsg-3
Severity: normal
Tags: sid bullseye
User: [email protected]
Usertags: py2removal
Python2 becomes end-of-live upstream, and Debian aims to remove
Python2 from the distribution, as discussed in
https://lists.debian.org/debian-python/2019/07/msg00080.html
Your package either build-depends, depends on Python2, or uses Python2
in the autopkg tests. Please stop using Python2, and fix this issue
by one of the following actions.
- Convert your Package to Python3. This is the preferred option. In
case you are providing a Python module foo, please consider dropping
the python-foo package, and only build a python3-foo package. Please
don't drop Python2 modules, which still have reverse dependencies,
just document them.
This is the preferred option.
- If the package is dead upstream, cannot be converted or maintained
in Debian, it should be removed from the distribution. If the
package still has reverse dependencies, raise the severity to
"serious" and document the reverse dependencies with the BTS affects
command. If the package has no reverse dependencies, confirm that
the package can be removed, reassign this issue to ftp.debian.org,
make sure that the bug priority is set to normal and retitle the
issue to "RM: PKG -- removal triggered by the Python2 removal".
- If the package has still many users (popcon >= 300), or is needed to
build another package which cannot be removed, document that by
adding the "py2keep" user tag (not replacing the py2remove tag),
using the [email protected] user. Also any
dependencies on an unversioned python package (python, python-dev)
must not be used, same with the python shebang. These have to be
replaced by python2/python2.7 dependencies and shebang.
This is the least preferred option.
If the conversion or removal needs action on another package first,
please document the blocking by using the BTS affects command, like
affects <bug number of blocking py2removal bug> + src:bedtools
If there is no py2removal bug for that reverse-dependency, please file
a bug on this package (similar to this bug report).
If there are questions, please refer to the wiki page for the removal:
https://wiki.debian.org/Python/2Removal, or ask for help on IRC
#debian-python, or the [email protected] mailing list.
--- End Message ---
--- Begin Message ---
Source: bedtools
Source-Version: 2.29.0+dfsg-2
We believe that the bug you reported is fixed in the latest version of
bedtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated bedtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 05 Dec 2019 12:11:59 +0100
Source: bedtools
Binary: bedtools bedtools-test
Architecture: source
Version: 2.29.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
bedtools - suite of utilities for comparing genomic features
bedtools-test - test data for the bedtools package
Closes: 936199
Changes:
bedtools (2.29.0+dfsg-2) unstable; urgency=medium
.
* Fix Build-Depends (s/python/python3/) and replace remaining references
to python by python3
Closes: #936199
* autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
* Remove patches louder, reproducible_build.patch that are missing
from debian/patches/series.
* Set fields Upstream-Contact in debian/copyright.
* Remove obsolete fields Contact, Name from debian/upstream/metadata.
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