Your message dated Wed, 18 Dec 2019 11:55:36 -0600
with message-id <[email protected]>
and subject line Re: Bug#946975: r-cran-rcpp: Won't load: ‘Rcpp’ was installed
by an R version with different internals
has caused the Debian Bug report #946975,
regarding r-cran-rcpp: Won't load: ‘Rcpp’ was installed by an R version with
different internals
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
946975: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=946975
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: r-cran-rcpp
Version: 1.0.0-1
Severity: grave
Justification: renders package unusable
Dear Maintainer,
* What led up to the situation?
I installed another package, r-cran-rcpp but it fails to load with the
error:
>>library(plotly)
>Carregando pacotes exigidos: ggplot2
>Error: package or namespace load failed for ‘ggplot2’:
> package ‘Rcpp’ was installed by an R version with different
internals; it needs to be reinstalled for use with this R version
>Erro: package ‘ggplot2’ could not be loaded
* What exactly did you do (or not do) that was effective (or
ineffective)?
I purged all R related packages ans re-installed them. I deleted the
~/R directory.
* What was the outcome of this action?
The error persists.
* What outcome did you expect instead?
For the error to be solved.
* Additional info:
I've recently upgraded from Debian Stretch and I didn't have aby
problems with rcpp on it. Perhaps because it wasn't installed or perhaps
because it was working.
-- System Information:
Debian Release: 10.2
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.19.0-6-amd64 (SMP w/4 CPU cores)
Locale: LANG=pt_BR.utf8, LC_CTYPE=pt_BR.utf8 (charmap=UTF-8),
LANGUAGE=pt_BR:pt:en (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages r-cran-rcpp depends on:
ii libc6 2.28-10
ii libgcc1 1:8.3.0-6
ii libstdc++6 8.3.0-6
pn littler <none>
pn r-api-3.5 <none>
pn r-base-core <none>
pn r-cran-littler <none>
pn r-cran-pkgkitten <none>
r-cran-rcpp recommends no packages.
Versions of packages r-cran-rcpp suggests:
pn r-cran-inline <none>
--- End Message ---
--- Begin Message ---
On 18 December 2019 at 18:21, [email protected] wrote:
| Package: r-cran-rcpp
| Version: 1.0.0-1
| Severity: grave
| Justification: renders package unusable
[ I have issues with severity, and the bug report. ]
| Dear Maintainer,
|
| * What led up to the situation?
| I installed another package, r-cran-rcpp but it fails to load with the
| error:
| >>library(plotly)
Is that a Debian package?
| >Carregando pacotes exigidos: ggplot2
| >Error: package or namespace load failed for ‘ggplot2’:
| > package ‘Rcpp’ was installed by an R version with different
| internals; it needs to be reinstalled for use with this R version
| >Erro: package ‘ggplot2’ could not be loaded
Not a problem with Rcpp.
| * What exactly did you do (or not do) that was effective (or
| ineffective)?
| I purged all R related packages ans re-installed them. I deleted the
| ~/R directory.
|
| * What was the outcome of this action?
| The error persists.
|
| * What outcome did you expect instead?
| For the error to be solved.
|
| * Additional info:
| I've recently upgraded from Debian Stretch and I didn't have aby
| problems with rcpp on it. Perhaps because it wasn't installed or perhaps
| because it was working.
Don't take this the wrong way but I think you failed to _demonstrate an issue
with the package you filed the report on_.
Here is a very quick study in Docker: we use a current Debian stable, and
install Rcpp.
edd@rob:~$ docker pull debian:stable
stable: Pulling from library/debian
aed38ff98c56: Pull complete
Digest:
sha256:4d1374a1b646c1d90e298778226dc7013dcabbc66cc9f0973b3e2e50bf16f5fd
Status: Downloaded newer image for debian:stable
docker.io/library/debian:stable
edd@rob:~$ docker run --rm -ti debian:stable
root@376dbdfd2879:/# apt-get update 2>&1 >/dev/null
root@376dbdfd2879:/# apt-get install -y r-cran-rcpp 2>&1 >/dev/null
debconf: delaying package configuration, since apt-utils is not installed
root@376dbdfd2879:/# R --quiet
> library(Rcpp)
> evalCpp("2+2")
[1] 4
> packageVersion("Rcpp")
[1] '1.0.0'
> q()
Save workspace image? [y/n/c]: n
root@376dbdfd2879:/# exit
edd@rob:~$
Now, if you made changes to your system, maybe installed from other repos
besides Debian?, then that is nothing we at Debian can control.
A simple and dirty fix may be ... to just install Rcpp from source, then
install ggplot2 and so on.
Or, if you prefer Debian stable, maybe don't render it borked by random
installation.
| -- System Information:
| Debian Release: 10.2
| APT prefers stable-updates
| APT policy: (500, 'stable-updates'), (500, 'stable')
| Architecture: amd64 (x86_64)
|
| Kernel: Linux 4.19.0-6-amd64 (SMP w/4 CPU cores)
| Locale: LANG=pt_BR.utf8, LC_CTYPE=pt_BR.utf8 (charmap=UTF-8),
LANGUAGE=pt_BR:pt:en (charmap=UTF-8)
| Shell: /bin/sh linked to /bin/dash
| Init: systemd (via /run/systemd/system)
| LSM: AppArmor: enabled
|
| Versions of packages r-cran-rcpp depends on:
| ii libc6 2.28-10
| ii libgcc1 1:8.3.0-6
| ii libstdc++6 8.3.0-6
| pn littler <none>
| pn r-api-3.5 <none>
| pn r-base-core <none>
So you are not using Debian toolchain anymore.
I am closing this bug report. Please feel free to re-open it if I misread.
More direct and clearer evidence why our packages (rather than your plotly
install) are to blame would help.
Thanks for trying Debian and Rcpp.
Dirk
| pn r-cran-littler <none>
| pn r-cran-pkgkitten <none>
|
| r-cran-rcpp recommends no packages.
|
| Versions of packages r-cran-rcpp suggests:
| pn r-cran-inline <none>
|
--
http://dirk.eddelbuettel.com | @eddelbuettel | [email protected]
--- End Message ---
