Your message dated Mon, 17 Feb 2020 23:24:45 +0100 with message-id <[email protected]> and subject line Re: Bug#695733: latexmk: bibtex does not find bib file has caused the Debian Bug report #695733, regarding latexmk: bibtex does not find bib file to be marked as done.
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--- Begin Message ---Package: latexmk Version: 1:4.24-1 Severity: important Dear Maintainer, Using a local configuration/initialization file (latexmkrc in same location as .tex file), I'm passing a path option to 'kpsewhich', so that it knows where to look for my bib file: $kpsewhich = "kpsewhich -path=bibliography %S"; This is the result of invoking latexmk: $ latexmk -pdf latexmk_bibtex_test.tex Latexmk: This is Latexmk, John Collins, 7 May 2011, version: 4.24. **** Report bugs etc to John Collins <collins at phys.psu.edu>. **** Latexmk: applying rule 'pdflatex'... Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex "latexmk_bibtex_test.tex"' ------------ This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian) restricted \write18 enabled. entering extended mode (./latexmk_bibtex_test.tex LaTeX2e <2011/06/27> Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, lo aded. (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (./latexmk_bibtex_test.aux) LaTeX Warning: Citation `test_citation' undefined on input line 10. No file latexmk_bibtex_test.bbl. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (./latexmk_bibtex_test.aux) LaTeX Warning: There were undefined references. )</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on latexmk_bibtex_test.pdf (1 page, 14941 bytes). Transcript written on latexmk_bibtex_test.log. Latexmk: Citation `test_citation' undefined Latexmk: Non-existent bbl file 'latexmk_bibtex_test.bbl' No file latexmk_bibtex_test.bbl. Latexmk: Log file says output to 'latexmk_bibtex_test.pdf' Latexmk: Found bibliography file(s) [bibliography/testbib.bib] Latexmk: applying rule 'bibtex latexmk_bibtex_test'... Rule 'bibtex latexmk_bibtex_test': File changes, etc: Non-existent destination files: 'latexmk_bibtex_test.bbl' ------------ Run number 1 of rule 'bibtex latexmk_bibtex_test' ------------ ------------ Running 'bibtex "latexmk_bibtex_test"' ------------ This is BibTeX, Version 0.99d (TeX Live 2012/Debian) The top-level auxiliary file: latexmk_bibtex_test.aux I couldn't open database file testbib.bib ---line 3 of file latexmk_bibtex_test.aux : \bibdata{testbib : } I'm skipping whatever remains of this command The style file: unsrt.bst I found no database files---while reading file latexmk_bibtex_test.aux Warning--I didn't find a database entry for "test_citation" (There were 2 error messages) Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'latexmk_bibtex_test.aux' 'latexmk_bibtex_test.bbl' Latexmk: applying rule 'pdflatex'... Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex "latexmk_bibtex_test.tex"' ------------ This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian) restricted \write18 enabled. entering extended mode (./latexmk_bibtex_test.tex LaTeX2e <2011/06/27> Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, lo aded. (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (./latexmk_bibtex_test.aux) LaTeX Warning: Citation `test_citation' undefined on input line 10. (./latexmk_bibtex_test.bbl LaTeX Warning: Empty `thebibliography' environment on input line 3. ) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (./latexmk_bibtex_test.aux) LaTeX Warning: There were undefined references. )</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></us r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on latexmk_bibtex_test.pdf (1 page, 23413 bytes). Transcript written on latexmk_bibtex_test.log. Latexmk: Citation `test_citation' undefined Latexmk: Found input bbl file 'latexmk_bibtex_test.bbl' Latexmk: Log file says output to 'latexmk_bibtex_test.pdf' Latexmk: Found bibliography file(s) [bibliography/testbib.bib] Latexmk: All targets (latexmk_bibtex_test.pdf) are up-to-date Collected error summary (may duplicate other messages): bibtex latexmk_bibtex_test: Bibtex errors: See file 'latexmk_bibtex_test.blg' Latexmk: Use the -f option to force complete processing. So it seems latexmk finds the bib file (or rather kpsewhich does), but somehow this information is not passed to bibtex which fails catastrophically (the same happens to a similar tool as latexmk called rubber). There's been a recent development in bibtex (version 0.99d included with texlive 2012) that forces it to use the option 'openout_any = p' for security reasons. It appears this blocks bibtex from being executed in a directory different from where the .tex file is. Could this be affecting the behavior of latexmk? I've changed it to 'openout_any = a', but it still doesn't work! I've attached a tarball with the log files and source files (tex and bib). I've also tried an absolute unix path, but it also fails. Thanks for your work on latexmk. I hope to be able to use it. Best Regards, Andres Cimmarusti -- System Information: Debian Release: wheezy/sid APT prefers testing APT policy: (900, 'testing'), (200, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 3.2.0-4-amd64 (SMP w/4 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages latexmk depends on: ii perl 5.14.2-15 ii texlive-latex-base 2012.20120611-5 Versions of packages latexmk recommends: ii acroread [pdf-viewer] 9.5.1-dmo7 ii evince-gtk [postscript-viewer] 3.4.0-3.1 ii ghostscript [postscript-viewer] 9.05~dfsg-6.2 Versions of packages latexmk suggests: pn gs-common <none> -- no debconf information
latexmk_bib_test.tar.gz
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--- Begin Message ---On 7/1/19 1:58 PM, Hilmar Preuße wrote: >> Using a local configuration/initialization file (latexmkrc in same >> location as .tex file), I'm passing a path option to 'kpsewhich', so >> that it knows where to look for my bib file: >> >> $kpsewhich = "kpsewhich -path=bibliography %S"; >> >> This is the result of invoking latexmk: >> > <snip> > >> So it seems latexmk finds the bib file (or rather kpsewhich does), but >> somehow this information is not passed to bibtex which fails >> catastrophically (the same happens to a similar tool as latexmk called >> rubber). >> > I'm trying to understand your bug report. > > 1. I do not understand your statement "latexmk finds the bib file (or > rather kpsewhich does)". On my system (Debian unstable) the kpsewhich > command does not find your bibliography. > > hille@sid:~/devel/TeXLive/open_bugs/695733 $ kpsewhich > --path=bibliography latexmk_bibtex_test > hille@sid:~/devel/TeXLive/open_bugs/695733 $ > > Please note that %S expands to the TeX source file, if I understand > correctly. The kpsewhich works, when all informations about the bib file > are submitted: > > hille@sid:~/devel/TeXLive/open_bugs/695733 $ kpsewhich > --path=$PWD/bibliography testbib.bib > /home/hille/devel/TeXLive/open_bugs/695733/bibliography/testbib.bib > hille@sid:~/devel/TeXLive/open_bugs/695733 $ > > ..however I don't see much gain in doing it this way. Putting $PWD into > latexmkrc does not work anyway. > > 2. kpsewhich is very good in finding files, when they are indexed in a > ls-lR database, which is probably not the case four your personal files. > > So my understanding is that you have wrong expectations, what kpsewhich > can do for you when searching files. Submitting the subdir directly in > the TeX source file seems to be a more smart solution: > > \bibliography{bibliography/testbib} > > Let me know your thoughts, > Hilmar > No reaction for half a year. Closing. Hilmar -- #206401 http://counter.li.org
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