Your message dated Wed, 04 Mar 2020 20:53:05 +0000
with message-id <[email protected]>
and subject line Bug#953117: fixed in infernal 1.1.3-5
has caused the Debian Bug report #953117,
regarding infernal: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
953117: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=953117
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: infernal
Version: 1.1.3-4
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: timestamps
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0] we noticed that
infernal could not be built reproducibly:
│ │ │ ├── ./usr/share/doc/infernal/examples/testsuite/i49.tbl
│ │ │ │ @@ -5,10 +5,10 @@
│ │ │ │ #
│ │ │ │ # Program: cmsearch
│ │ │ │ # Version: 1.1.3 (Nov 2019)
│ │ │ │ # Pipeline mode: SEARCH
│ │ │ │ # Query file: ./../testsuite/bug-i49.cm
│ │ │ │ # Target file: ./../testsuite/bug-i49.fa
│ │ │ │ # Option settings: ../src/cmsearch --tblout i49.tbl --toponly --cpu 0
./../testsuite/bug-i49.cm ./../testsuite/bug-i49.fa
│ │ │ │ -# Current dir: /build/1st/infernal-1.1.3/testsuite
│ │ │ │ -# Date: Sun Mar 1 19:36:34 2020
│ │ │ │ +# Current dir: /build/2/infernal-1.1.3/2nd/testsuite
│ │ │ │ +# Date: Mon Apr 5 04:14:10 2021
│ │ │ │ # [ok]
Patch attached that excludes this nondetermistic file from the binary
package.
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/rules 2020-03-04 10:10:02.000119663 -0800
--- b/debian/rules 2020-03-04 10:20:14.910600860 -0800
@@ -51,4 +51,5 @@
cd $(sampledir) && ln -s
../../../../lib/$(DEB_TARGET_MULTIARCH)/$(DEB_SOURCE)/examples/easel ./easel \
&& ln -s
../../../../lib/$(DEB_TARGET_MULTIARCH)/$(DEB_SOURCE)/examples/src ./src
cp -aR testsuite $(sampledir)/
+ rm $(sampledir)/testsuite/*.tbl
cp ./easel/devkit/sqc $(sampledir)/
--- End Message ---
--- Begin Message ---
Source: infernal
Source-Version: 1.1.3-5
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
infernal, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated infernal package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 04 Mar 2020 19:51:06 +0100
Source: infernal
Architecture: source
Version: 1.1.3-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 953117
Changes:
infernal (1.1.3-5) unstable; urgency=medium
.
* Make build reproducible
Closes: #953117
* Standards-Version: 4.5.0 (routine-update)
* Add salsa-ci file (routine-update)
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