Your message dated Tue, 12 May 2020 19:04:09 +0000 with message-id <[email protected]> and subject line Bug#960380: fixed in python-xarray 0.15.1-3 has caused the Debian Bug report #960380, regarding python3-xarray: Import fails if python3-sparse is also installed to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 960380: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960380 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: python3-xarray Version: 0.15.1-2 Severity: normal Hi, if python3-xarray and python3-sparse are both installed, importing xarray fails with an AttributeError, because xarray uses an unqualified "import sparse" trying to import an internal package. The internal package is shadowed by python3-sparse, which does not have the same API as xarray's internal package. The full backtrace in ipython3 is: 22:09:205:~> ipython3 Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) Type 'copyright', 'credits' or 'license' for more information IPython 7.14.0 -- An enhanced Interactive Python. Type '?' for help. In [1]: import xarray as xr --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) <ipython-input-1-b027d314c3e9> in <module> ----> 1 import xarray as xr /usr/lib/python3/dist-packages/xarray/__init__.py in <module> 1 import pkg_resources 2 ----> 3 from . import testing, tutorial, ufuncs 4 from .backends.api import ( 5 load_dataarray, /usr/lib/python3/dist-packages/xarray/testing.py in <module> 5 import pandas as pd 6 ----> 7 from xarray.core import duck_array_ops, formatting 8 from xarray.core.dataarray import DataArray 9 from xarray.core.dataset import Dataset /usr/lib/python3/dist-packages/xarray/core/duck_array_ops.py in <module> 12 import pandas as pd 13 ---> 14 from . import dask_array_compat, dask_array_ops, dtypes, npcompat, nputils 15 from .nputils import nanfirst, nanlast 16 from .pycompat import dask_array_type /usr/lib/python3/dist-packages/xarray/core/dask_array_compat.py in <module> 5 import numpy as np 6 ----> 7 from .pycompat import dask_array_type 8 9 try: /usr/lib/python3/dist-packages/xarray/core/pycompat.py in <module> 15 import sparse 16 ---> 17 sparse_array_type = (sparse.SparseArray,) 18 except ImportError: # pragma: no cover 19 sparse_array_type = () AttributeError: module 'sparse' has no attribute 'SparseArray' Cheers, Mika -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (650, 'testing'), (450, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.6.0-1-amd64 (SMP w/8 CPU cores) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages python3-xarray depends on: ii python3 3.8.2-3 ii python3-numpy 1:1.17.4-5 ii python3-pandas 0.25.3+dfsg2-2 ii python3-pkg-resources 46.1.3-1 Versions of packages python3-xarray recommends: ii python3-bottleneck 1.2.1+ds1-2+b2 ii python3-dask 2.11.0+dfsg-1 ii python3-h5netcdf 0.8.0-1 ii python3-netcdf4 1.5.3-1+b5 ii python3-zarr 2.4.0+ds-1 Versions of packages python3-xarray suggests: pn python-xarray-doc <none> pn python3-cartopy <none> ii python3-matplotlib 3.2.1-1+b1 pn python3-pydap <none> pn python3-rasterio <none> ii python3-scipy 1.4.1-2 ii python3-seaborn 0.10.1-1 ii python3-toolz 0.9.0-1.1 -- no debconf information
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--- Begin Message ---Source: python-xarray Source-Version: 0.15.1-3 Done: Alastair McKinstry <[email protected]> We believe that the bug you reported is fixed in the latest version of python-xarray, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Alastair McKinstry <[email protected]> (supplier of updated python-xarray package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 12 May 2020 17:04:22 +0100 Source: python-xarray Architecture: source Version: 0.15.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <[email protected]> Changed-By: Alastair McKinstry <[email protected]> Closes: 960380 Changes: python-xarray (0.15.1-3) unstable; urgency=medium . * patch: Use sparse.COO or scipy.sparse.coo_matrix for sparse matrices, not sparse.SparseArray, which doesn't exist. Closes: #960380. Checksums-Sha1: 8837b0bf2540863440998d4b153cd1d38ae6161a 3289 python-xarray_0.15.1-3.dsc fd4224995c8fe80122d0c2448dfd5524d60f033a 13624 python-xarray_0.15.1-3.debian.tar.xz Checksums-Sha256: fa7bbea09822de43fdffa407319699876fd9e5407339f96016526420dd96985b 3289 python-xarray_0.15.1-3.dsc 856b69536696c6011c3ef952f089a70a01406719294a11f3f7a22d2a1dc9e213 13624 python-xarray_0.15.1-3.debian.tar.xz Files: c18ab8c5a2cab60b19465027c6404702 3289 python optional python-xarray_0.15.1-3.dsc 7a011403195ca09fc5baeaa89dd86968 13624 python optional python-xarray_0.15.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEgjg86RZbNHx4cIGiy+a7Tl2a06UFAl666ykACgkQy+a7Tl2a 06VrcBAArJ2iCZF6WhRB99PPmZZi7yLu/D/V1xv4PXq3+JkX1eBx+DCMiTiNWv9e CcK2SsvuVTz8QUa+HyxRZA33MJCIECxHqUxZ7UutOrdzrUGa6IWt/ho6ZRQkL41F 07WWO/FA0XL8c2w96X/JxSwIg8pStgZEKkjG/g7AKPausuUEF+hn9DoVR11r4zdY tAyZ11kEaDjzPSvkYwxXzE+NP/oh+OLQtQF0lG82qId/YD4iFFtO6Ha1hG8D9qnI nSrVGJATLAzbVCfsZ00CtByJdXIBdJSFAa3DN9qx7mwMx6KRGXYFRwRp4JQhMDq5 E5J2MTr15BQAcZqIKC7nIC9o/8e4RiPmmZm/tCDahMgi/RIjPp27rAXD6Jy4v72P 6dC8KeIOMV6hjtX04GHdoPvcySh34CZAtUTsrIck8cF5PGF4nP4rzq3waR2LQU9g FMqTRekVcdtBhDnn+1J2Rl2HgFaHDL662331up5KaBDUw7BX8MLc5JG9PGqWFqyP px8D57szudk8mkVDKywj+U+tydI/TRnM69OngC+xsp32WcrydGcheOup5xqTiGbt MQlui0/KtOSUmBUJwvMq0CkNFa5RQ8gFTj6XgNYM3J2xtPB5qq31Ue10TdfCxk5E FXfL5cFskeVv8dRN10Oor9e/QNu4//znYZoocwGb2SZszKFA5Ag= =erqx -----END PGP SIGNATURE-----
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