Your message dated Mon, 25 May 2020 06:03:36 +0000
with message-id <[email protected]>
and subject line Bug#961001: fixed in r-bioc-chemminer 3.40.0+dfsg-2
has caused the Debian Bug report #961001,
regarding r-bioc-chemminer: autopkgtest failure
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
961001: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961001
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-bioc-chemminer
Version: 3.38.0+dfsg-3
Severity: serious
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-chemminer/5030571/log.gz
...
RUNIT TEST PROTOCOL -- Fri Apr 17 15:28:55 2020
***********************************************
Number of test functions: 24
Number of deactivated test functions: 7
Number of errors: 2
Number of failures: 0
1 Test Suite :
ChemmineR RUnit Tests - 24 test functions, 2 errors, 0 failures
DEACTIVATED test_ea.comparison: local test
DEACTIVATED test_ea.dupDescriptors: local test only
DEACTIVATED test.3dCoords: causing timeout on bioc, disabling for now
ERROR in test.formatConversions: Error : Forbidden
DEACTIVATED test.genAPDescriptors: removed old version of function
DEACTIVATED test.largestComponent: just for manual testing
DEACTIVATED test.parseV3000: requires local files
DEACTIVATED test.propOB: fails on ubuntu 16.04
ERROR in test.pubchemPUG: Error :
Test files with failing tests
test_db.R
test_ea.comparison
test_ea.dupDescriptors
test_general.R
test.3dCoords
test.formatConversions
test.genAPDescriptors
test.largestComponent
test.parseV3000
test.propOB
test.pubchemPUG
Error in BiocGenerics:::testPackage("ChemmineR") :
unit tests failed for package ChemmineR
In addition: Warning messages:
1: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return
= TRUE, :
there is no package called ‘ChemmineOB’
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return
= TRUE, :
there is no package called ‘ChemmineOB’
Execution halted
autopkgtest [15:28:55]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [15:28:55]: test pkg-r-autopkgtest: - - - - - - - - - - results -
- - - - - - - - -
pkg-r-autopkgtest FAIL non-zero exit status 1
I think "Testsuite: autopkgtest-pkg-r" is just the same problem as
the one documented in debian/tests/control_needs_r-bioc-chemmineob
(BTW: r-bioc-chemmineob is not in Debian at all.)
--- End Message ---
--- Begin Message ---
Source: r-bioc-chemminer
Source-Version: 3.40.0+dfsg-2
Done: =?utf-8?q?Dylan_A=C3=AFssi?= <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-bioc-chemminer, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dylan Aïssi <[email protected]> (supplier of updated r-bioc-chemminer package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 25 May 2020 07:15:47 +0200
Source: r-bioc-chemminer
Architecture: source
Version: 3.40.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Dylan Aïssi <[email protected]>
Closes: 961001
Changes:
r-bioc-chemminer (3.40.0+dfsg-2) unstable; urgency=medium
.
* Update patch to skip another test requiring ChemmineOB (Closes: #961001)
Checksums-Sha1:
b44628674b8fe45b0d4afb5f2a408e6da8f4274b 2282
r-bioc-chemminer_3.40.0+dfsg-2.dsc
329e29a2f9cb50d40024437f0521a6472e6c68c4 6596
r-bioc-chemminer_3.40.0+dfsg-2.debian.tar.xz
ad1587e945817a9d7ed5a6d6a0cc849edfb31c42 11574
r-bioc-chemminer_3.40.0+dfsg-2_amd64.buildinfo
Checksums-Sha256:
b7a74dbf5ec925e1af533755340f12ac220acad40eb180f8fcf467ddecb5e0ec 2282
r-bioc-chemminer_3.40.0+dfsg-2.dsc
2ea6ec5d14411e44263f2e2d64c953c6163fe0c86aa4d26e51896009e6897548 6596
r-bioc-chemminer_3.40.0+dfsg-2.debian.tar.xz
303c95fb7797e93f45fb0dada8bb31b586e35b10d98be2215cc62885dfa49de5 11574
r-bioc-chemminer_3.40.0+dfsg-2_amd64.buildinfo
Files:
647738e42b31c17cf791b5db7424b6cb 2282 gnu-r optional
r-bioc-chemminer_3.40.0+dfsg-2.dsc
91bcfeca56be3823eaebb4990cf68f89 6596 gnu-r optional
r-bioc-chemminer_3.40.0+dfsg-2.debian.tar.xz
51e1be02043cd7143131b2a2781cea98 11574 gnu-r optional
r-bioc-chemminer_3.40.0+dfsg-2_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----
iQIzBAEBCgAdFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAl7LWjUACgkQYS7xYT4F
D1S8Xw/+NVrakEPz8OL4VN1HYnYV6bm9QQW2QiOVgim0aAOIl1FvLaUh+W988rdf
zF9TfCn5M45tBFw/MAgVnJhxTeeli43j96ZDqzUqanfg2W3TEsy8fKM05uthKBDW
b40lkmKfnwXH1zw1+MYrW+eUanCED5Kw0ZFAbkE17DMyudBCW4+aFQ7jZSF1U01y
DNHQ4avivINJX5pOlFtki9nkKTYlPdN9upmAzWrzkPNh/dfuzc5L7ZNHC1GNtEtk
YR/gpgS4Oia7tYvbBcQqWf2uFsoyL2NQCqH/3R+H5+/O6wdhzfzP99hnz8EfLbUz
gf/aVWB2Gu7f5x7JNNcWuRXxFQOSSfbe8+KiPN4Lje89EJ+46ZLP3NdoZsojOan4
FbtIFA9Op+dQrBd2xjqB6rg/0l9/rXrFUF1RLnjzAF0xjmk/35ngmFsVl2cwIP/A
bBqe1W8WtQqRajS6NvQGjwDu4Cc4g3taNGQzZjKDerTuGrTkwEyJmig7EbkIVcNv
RLX7DOxO9FkkFuehdOUGU+xdAWzEIXGbsTOHszLEWWQBhtF8gcmmqOfsmTocDCye
Na/dHVE1VNy/CcqHwpylTDxMUSiZZgv5PSANAHJs0HAqKOue6RRDJWx46Llfp1a0
QLaCLL2LCzyha0EXHsCqS0+OUBhqGkHwdetumx2hLNUihRL7Rok=
=xKJA
-----END PGP SIGNATURE-----
--- End Message ---
