Your message dated Wed, 05 Aug 2020 06:48:46 +0000
with message-id <[email protected]>
and subject line Bug#966865: fixed in kalign 1:3.2.3-4
has caused the Debian Bug report #966865,
regarding kalign: FTBFS: ld: esl_stopwatch.o:./src/tldevel.h:567: multiple
definition of `logsum_lookup'; tldevel.o:./src/tldevel.h:567: first defined here
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
966865: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966865
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: kalign
Version: 1:3.2.3-3
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200802 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> /bin/bash ../libtool --tag=CC --mode=link gcc -fopenmp -O3 -std=gnu11
> -DHAVE_AVX2=1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security
> -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -D_FORTIFY_SOURCE=2
> -ffunction-sections -fdata-sections -Wl,--gc-sections -Wl,--as-needed
> -Wno-undef -Wl,-z,relro -Wl,-z,now -o timescorealn tldevel.o esl_stopwatch.o
> time_and_score_aln.o parameters.o alphabet.o rwalign.o misc.o -lpthread -lm
> libtool: link: gcc -fopenmp -O3 -std=gnu11 -DHAVE_AVX2=1 -g -O2
> -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2
> -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -Wl,--gc-sections
> -Wl,--as-needed -Wno-undef -Wl,-z -Wl,relro -Wl,-z -Wl,now -o timescorealn
> tldevel.o esl_stopwatch.o time_and_score_aln.o parameters.o alphabet.o
> rwalign.o misc.o -lpthread -lm -fopenmp
> /usr/bin/ld: esl_stopwatch.o:./src/tldevel.h:567: multiple definition of
> `logsum_lookup'; tldevel.o:./src/tldevel.h:567: first defined here
> /usr/bin/ld: time_and_score_aln.o:./src/tldevel.h:567: multiple definition of
> `logsum_lookup'; tldevel.o:./src/tldevel.h:567: first defined here
> /usr/bin/ld: parameters.o:./src/tldevel.h:567: multiple definition of
> `logsum_lookup'; tldevel.o:./src/tldevel.h:567: first defined here
> /usr/bin/ld: alphabet.o:./src/tldevel.h:567: multiple definition of
> `logsum_lookup'; tldevel.o:./src/tldevel.h:567: first defined here
> /usr/bin/ld: rwalign.o:./src/tldevel.h:567: multiple definition of
> `logsum_lookup'; tldevel.o:./src/tldevel.h:567: first defined here
> /usr/bin/ld: misc.o:./src/tldevel.h:567: multiple definition of
> `logsum_lookup'; tldevel.o:./src/tldevel.h:567: first defined here
> collect2: error: ld returned 1 exit status
The full build log is available from:
http://qa-logs.debian.net/2020/08/02/kalign_3.2.3-3_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: kalign
Source-Version: 1:3.2.3-4
Done: Nilesh Patra <[email protected]>
We believe that the bug you reported is fixed in the latest version of
kalign, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <[email protected]> (supplier of updated kalign package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 04 Aug 2020 21:43:28 +0000
Source: kalign
Architecture: source
Version: 1:3.2.3-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Nilesh Patra <[email protected]>
Closes: 966865
Changes:
kalign (1:3.2.3-4) unstable; urgency=medium
.
* Team Upload.
[ Michael R. Crusoe ]
* patches forwarded upstream
.
[ Nilesh Patra ]
* Fix gcc-10 FTBFS (Closes: #966865)
* Add manpages
* compat version: 13, run wrap-and-sort
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--- End Message ---
