Your message dated Fri, 23 Oct 2020 07:48:59 +0000
with message-id <[email protected]>
and subject line Bug#972635: fixed in mdtraj 1.9.4+git20201015.068f29a-1
has caused the Debian Bug report #972635,
regarding mdtraj: manual pages contain error messages instead of examples, etc.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
972635: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972635
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: mdtraj
Version: 1.9.4-5
Severity: wishlist
User: [email protected]
Usertags: timestamps
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort we noticed that
mdtraj could not be built reproducibly.
This is because (amongst other reasons) the HTML manual pages
contain error messages. For example:
`nbconvert --execute` requires the jupyter_client package: `pip install
jupyter_client`
… which contain HTML links to the absolute build path. This particular
message is due to a missing build-dependency, but there are then
others, such as:
No such kernel named python3
… which seem like some other, underlying, problem.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- End Message ---
--- Begin Message ---
Source: mdtraj
Source-Version: 1.9.4+git20201015.068f29a-1
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
mdtraj, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated mdtraj package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
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Hash: SHA256
Format: 1.8
Date: Fri, 23 Oct 2020 15:08:19 +0800
Source: mdtraj
Architecture: source
Version: 1.9.4+git20201015.068f29a-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 972635
Changes:
mdtraj (1.9.4+git20201015.068f29a-1) unstable; urgency=medium
.
* New upstream snapshot.
- adds support for NEON (arm64)
* Build-Depends-Indep: python3-ipykernel, python3-jupyter-client,
python3-matplotlib, python3-six, python3-sklearn
to build docs from examples. Closes: #972635.
* set MPLCONFIGDIR to catch matplotlib output for examples in docs
and fix doc access to generated image files
* Remove local __pycache__ when running debian/rules clean
(dh_auto_clean)
* predownload .pdb files from http://www.rcsb.org/pdb/files and
store in debian/external alongside doi badge
(to enable doc build when internet is not available for build)
* debian patch reinstate_astor_not_astunparse_revert_a8b2b9c.patch
reverts upstream commit a8b2b9c to reinstate astor instead of
astunparse (astunparse is not yet packaged for Debian)
* create mdconvert.1, mdinspect.1 man pages using help2man
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