Your message dated Sat, 05 Dec 2020 11:21:13 +0000 with message-id <[email protected]> and subject line Bug#974184: fixed in siconos 4.3.0+dfsg-3 has caused the Debian Bug report #974184, regarding python3-siconos: mechanics-tools tests fail with h5py 3.1 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 974184: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=974184 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: python3-siconos Version: 4.3.0+dfsg-2 Severity: normal The mechanics-tools tests for siconos are failing with python3-h5py 3.1.0-1exp1 from experimental. The error message is ... [io.mechanics] step 600 of 600 [io.mechanics] output in hdf5 file at step 600 [io.mechanics] number of contacts 4 (detected) 4 (active at velocity level. approx) [io.mechanics] Numerics solver info at time : 3.000000 iterations = 8 precision = 8.160e-08 [io.mechanics] Excluding object IDs [] Traceback (most recent call last): File "h5py/_debian_h5py_serial/h5o.pyx", line 302, in h5py._debian_h5py_serial.h5o.cb_obj_simple File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/group.py", line 591, in proxy return func(name, self[name]) File "/usr/bin/siconos_filter", line 156, in visitor ds[range(len(time_idx)),:] = obj[time_idx,:] File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in h5py._debian_h5py_serial._objects.with_phil.wrapper File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in h5py._debian_h5py_serial._objects.with_phil.wrapper File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/dataset.py", line 910, in __setitem__ selection = sel.select(self.shape, args, dataset=self) File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/selections.py", line 82, in select return selector.make_selection(args) File "h5py/_debian_h5py_serial/_selector.pyx", line 272, in h5py._debian_h5py_serial._selector.Selector.make_selection File "h5py/_debian_h5py_serial/_selector.pyx", line 213, in h5py._debian_h5py_serial._selector.Selector.apply_args TypeError: Simple selection can't process range(0, 1556) The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/bin/siconos_filter", line 234, in <module> io_in.visititems(CopyVisitor( File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/group.py", line 592, in visititems return h5o.visit(self.id, proxy) File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in h5py._debian_h5py_serial._objects.with_phil.wrapper File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in h5py._debian_h5py_serial._objects.with_phil.wrapper SystemError: <built-in function visit> returned a result with an error set ASSERT:Unknown failure encountered running a test Full log at https://ci.debian.net/packages/s/siconos/unstable/amd64/ https://ci.debian.net/data/autopkgtest/unstable/amd64/s/siconos/8011428/log.gz -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.9.0-1-amd64 (SMP w/8 CPU threads) Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), LANGUAGE=en_AU:en Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages python3-siconos depends on: ii libboost-serialization1.71.0 1.71.0-7+b1 ii libbullet3.06 3.06+dfsg-3 ii libc6 2.31-4 ii libcxsparse3 1:5.8.1+dfsg-2 ii libfclib0 3.1.0+dfsg-2 ii libgcc-s1 10.2.0-16 pn libsiconos-control6 <none> pn libsiconos-io6 <none> pn libsiconos-kernel6 <none> pn libsiconos-mechanics6 <none> pn libsiconos-numerics6 <none> ii libstdc++6 10.2.0-16 ii python3 3.8.6-1 ii python3-numpy 1:1.19.4-1 pn siconos <none> python3-siconos recommends no packages. python3-siconos suggests no packages.
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--- Begin Message ---Source: siconos Source-Version: 4.3.0+dfsg-3 Done: Stephen Sinclair <[email protected]> We believe that the bug you reported is fixed in the latest version of siconos, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Stephen Sinclair <[email protected]> (supplier of updated siconos package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 28 Nov 2020 22:00:41 +0000 Source: siconos Architecture: source Version: 4.3.0+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <[email protected]> Changed-By: Stephen Sinclair <[email protected]> Closes: 974184 Changes: siconos (4.3.0+dfsg-3) unstable; urgency=medium . * Patch to fix indexing bug in siconos_filter program. (Closes: #974184) * Patch to suppress a warning due to CMake's FindBoost in siconos script. Checksums-Sha1: e03fcd27e22110afba2d58684bc5498a0abe198f 3587 siconos_4.3.0+dfsg-3.dsc 6ac1087180c08e2a10992d7118b3227ee26c360a 24332 siconos_4.3.0+dfsg-3.debian.tar.xz Checksums-Sha256: 76d442c965ad2c6cbe24c0f73d337d4537a5c57b1794674260517113852769e0 3587 siconos_4.3.0+dfsg-3.dsc 52e22e94461a2de1297b2074bbaf73fa4da66d2ef44bf148ffd36b947a5b1a76 24332 siconos_4.3.0+dfsg-3.debian.tar.xz Files: f23fb825ccc2c9eb3510e58ad7f98dca 3587 science optional siconos_4.3.0+dfsg-3.dsc 7e65329e76514a34cb5161969297613f 24332 science optional siconos_4.3.0+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEZaEt9P4xrWusTXauM1X01jtYIcwFAl/LQ0UACgkQM1X01jtY IcwqNw/+NWcNvhtVkxuHjc27rsqAcT1jnt4aUV0eAkr+VxeG9oN+rns9laP1XPW/ 6LleseF8QGM8rZAHoKxTsL899ym7smxpR8RUjjbKDX4q6PZ6eY2ChhNKOAkuEcTw 19rLDX8RzXMY/7dCzALjke+cA3gkEthNAy9YDuj5/5BfBuZGCrT7QDt0tC/EP43t 2A20t8cCcVlgC/YP9ePNpkzZb6f+BcpcLYjr+Rnyqe3TTKLscHRZDcqj+OYOnfTU ZYdtU2b+96CdiDlBfPKPeyevyD/P2xr1+aX3sqXg4m+F/oBhI0TQ+matNYXEWyXD hTIG1EzSxN7pRlW2eq8UGfazmG0m74J3/H1YL/mwdh7B9Bp+/Bc7+IoOXIbwBLzl ob6uDZoV0nwmuXn/0XaV8OXdR044/0SqMbn5C0qJR7i2AS/3Lan81eLRfVyI9rlJ C7UWtYNFqd2R5ziS6/hA+TuiYxHHryAt52SSk+kfTe9W6MIRnNH68Lxm4irP2fbf eW+4x+6CnWEMPIkN5IruXM4NSHQgwT6mRF3eVocw0QPQpzG6il2kUHtOPENsP2e/ 6p5XwRRFqxzeseYwS3IJVvQxFC6f5YR/NpLJ7cauxoiGTl/Uxi4/CoJzm/u4jkwB bIi94OPKlRzo0qoQs9lC0eaErSEQFAdNNS6kzf3obPYa5OS3Yck= =rC8B -----END PGP SIGNATURE-----
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