Your message dated Sat, 5 Dec 2020 18:39:22 +0530
with message-id <[email protected]>
and subject line Re: FTBFS: FileNotFoundError
has caused the Debian Bug report #956220,
regarding FTBFS: FileNotFoundError
to be marked as done.
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--
956220: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=956220
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:q2-cutadapt
Version: 2019.10.0-1
Control: tags -1 ftbfs
--
Dear maintainer,
trying to reproduce the ppc64el specific failure :
https://buildd.debian.org/status/fetch.php?pkg=q2-cutadapt&arch=ppc64el&ver=2019.10.0-1&stamp=1582306016&raw=0
I actually found out that q2-cutadapt fails to build on ppc64el as well
as on amd64 and maybe more currently. Maybe something related with qiime ?
--
q2_cutadapt/tests/test_demux.py FFFFFFFFFFFFFFF..........
[ 73%]
q2_cutadapt/tests/test_trim.py FFFF.....
[100%]
=============================================================== FAILURES
================================================================
___________________________________________________
TestDemuxSingle.test_all_matched
____________________________________________________
self = <q2_cutadapt.tests.test_demux.TestDemuxSingle
testMethod=test_all_matched>
def test_all_matched(self):
metadata = CategoricalMetadataColumn(
pd.Series(['AAAA', 'CCCC', 'GGGG'], name='Barcode',
index=pd.Index(['sample_a', 'sample_b', 'sample_c'],
name='id')))
with redirected_stdio(stderr=os.devnull):
obs_demuxed_art, obs_untrimmed_art = \
> self.demux_single_fn(self.muxed_sequences, metadata)
q2_cutadapt/tests/test_demux.py:82:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
<decorator-gen-125>:2: in demux_single
???
/usr/lib/python3/dist-packages/qiime2/sdk/action.py:215: in bound_callable
provenance.add_input(name, artifact)
/usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:406: in
add_input
self.inputs[name] = self.add_ancestor(input)
/usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:157: in
add_ancestor
shutil.copytree(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
src =
'/tmp/qiime2-archive-v4zvnm2n/c361bb75-7dcd-4a97-976e-629b57020e7c/provenance'
dst =
'/tmp/qiime2-provenance-pnb_bn2t/artifacts/c361bb75-7dcd-4a97-976e-629b57020e7c',
symlinks = False
ignore = <function ignore_patterns.<locals>._ignore_patterns at
0x7f76a7814310>, copy_function = <function copy2 at 0x7f76c55688b0>
ignore_dangling_symlinks = False, dirs_exist_ok = False
def copytree(src, dst, symlinks=False, ignore=None, copy_function=copy2,
ignore_dangling_symlinks=False, dirs_exist_ok=False):
"""Recursively copy a directory tree and return the destination
directory.
dirs_exist_ok dictates whether to raise an exception in case dst or any
missing parent directory already exists.
If exception(s) occur, an Error is raised with a list of reasons.
If the optional symlinks flag is true, symbolic links in the
source tree result in symbolic links in the destination tree; if
it is false, the contents of the files pointed to by symbolic
links are copied. If the file pointed by the symlink doesn't
exist, an exception will be added in the list of errors raised in
an Error exception at the end of the copy process.
You can set the optional ignore_dangling_symlinks flag to true if you
want to silence this exception. Notice that this has no effect on
platforms that don't support os.symlink.
The optional ignore argument is a callable. If given, it
is called with the `src` parameter, which is the directory
being visited by copytree(), and `names` which is the list of
`src` contents, as returned by os.listdir():
callable(src, names) -> ignored_names
Since copytree() is called recursively, the callable will be
called once for each directory that is copied. It returns a
list of names relative to the `src` directory that should
not be copied.
The optional copy_function argument is a callable that will be used
to copy each file. It will be called with the source path and the
destination path as arguments. By default, copy2() is used, but any
function that supports the same signature (like copy()) can be used.
"""
sys.audit("shutil.copytree", src, dst)
> with os.scandir(src) as itr:
E FileNotFoundError: [Errno 2] No such file or directory:
'/tmp/qiime2-archive-v4zvnm2n/c361bb75-7dcd-4a97-976e-629b57020e7c/provenance'
/usr/lib/python3.8/shutil.py:552: FileNotFoundError
--
Regards,
F.
pgplY_JofLqO2.pgp
Description: PGP signature
--- End Message ---
--- Begin Message ---
Control: fixed 956220 2020.11.0-1
Fixed in the new upstream release.
Thanks!
signature.asc
Description: OpenPGP digital signature
--- End Message ---
