Your message dated Tue, 09 Feb 2021 08:22:12 +0000
with message-id <[email protected]>
and subject line Bug#978032: fixed in python-cobra 0.21.0-1
has caused the Debian Bug report #978032,
regarding python-cobra: autopkgtest regression in testing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
978032: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978032
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-cobra
Version: 0.19.0-1
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: regression
Hi Maintainer
The autopkgtests of python-cobra recently started to fail in testing [1].
I've copied what I hope is the relevant part of the log below.
Regards
Graham
[1] https://ci.debian.net/packages/p/python-cobra/testing/amd64/
==================================== ERRORS ====================================
______________ ERROR at setup of TestManipulation.test_escape_ids ______________
filename = '/usr/lib/python3/dist-packages/cobra/test/data/textbook.xml.gz'
number = <class 'float'>
f_replace = {'F_GENE': <function _f_gene at 0x7f75f8c3cc10>,
'F_GENE_REV': <function _f_gene_rev at 0x7f75f8c3cca0>, 'F_GROUP':
<function _f_group at 0x7f75f8c3cf70>, 'F_GROUP_REV': <function
_f_group_rev at 0x7f75f8531040>, ...}
kwargs = {}
doc = <libsbml.SBMLDocument; proxy of <Swig Object of type
'SBMLDocument *' at 0x7f75f402cc60> >
cobra_error = CobraSBMLError('Something went wrong reading the SBML
model. Most likely the SBML model is not valid. Please check
tha...ame)`\nIf the model is valid and cannot be read please open an
issue at https://github.com/opencobra/cobrapy/issues .')
--- End Message ---
--- Begin Message ---
Source: python-cobra
Source-Version: 0.21.0-1
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-cobra, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated python-cobra package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 09 Feb 2021 08:43:16 +0100
Source: python-cobra
Architecture: source
Version: 0.21.0-1
Distribution: unstable
Urgency: high
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 978032
Changes:
python-cobra (0.21.0-1) unstable; urgency=high
.
* Team upload.
* New upstream version
Closes: #978032
* Standards-Version: 4.5.1 (routine-update)
* No tab in license text (routine-update)
* watch file standard 4 (routine-update)
* Build-Depends: python3-appdirs, python3-httpx, python3-pydantic,
python3-rich
* Versioned Build-Depends: python3-swiglpk (>= 4.65.1)
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