Your message dated Wed, 17 Mar 2021 18:18:24 +0000
with message-id <[email protected]>
and subject line Bug#985410: fixed in bioawk 1.0-4
has caused the Debian Bug report #985410,
regarding bioawk FTCBFS -- execute maketab during build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
985410: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=985410
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: bioawk
Version: 1.0-3
Severity: normal
Tags: patch
X-Debbugs-Cc: [email protected], [email protected]
Dear Maintainer,
Since bioawk seems to execute maketab to generate proctab.c which is not
allowed during cross build
it could be simply built with build compiler to generate proctab.c
Since maketab binary is not being installed, such a compilation would
not give any exec format problems. I compared the output of ./maketab
i.e. proctab.c across amd64, i386 and arm64 as well as skimmed through
the code. Compiling this particular file with build compiler does not
seem like a problem.
I'm attaching my patch along, and will commit to salsa if it looks good.
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
diff --git a/debian/changelog b/debian/changelog
index e2280a3..f74bbe9 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+bioawk (1.0-4) UNRELEASED; urgency=medium
+
+ * d/p/cross.patch: Fix non-cross buildability
+ * Use dpkg buildtools to set CC and CC_FOR_BUILD
+
+ -- Nilesh Patra <[email protected]> Wed, 17 Mar 2021 22:23:42 +0530
+
bioawk (1.0-3) unstable; urgency=medium
* Change test dependency from swarm to
diff --git a/debian/patches/cross.patch b/debian/patches/cross.patch
new file mode 100644
index 0000000..1b56827
--- /dev/null
+++ b/debian/patches/cross.patch
@@ -0,0 +1,14 @@
+Description: Compile maketab with build compiler, since it executes during
build time - the generated proctab.c does not seem to vary across arches
+Author: Nilesh Patra <[email protected]>
+Last-Update: 2021-03-17
+--- a/Makefile
++++ b/Makefile
+@@ -53,7 +53,7 @@
+ ./maketab >proctab.c
+
+ maketab: ytab.h maketab.c
+- $(CC) $(CFLAGS) $(CPPFLAGS) maketab.c -o maketab $(LDFLAGS)
++ $(CC_FOR_BUILD) $(CFLAGS) $(CPPFLAGS) maketab.c -o maketab $(LDFLAGS)
+
+ names:
+ @echo $(LISTING)
diff --git a/debian/patches/series b/debian/patches/series
index a17d1e6..dea1943 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
Makefile.patch
hardening.patch
+cross.patch
diff --git a/debian/rules b/debian/rules
index dd4dd7e..fd7fd8d 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,6 +1,8 @@
#!/usr/bin/make -f
export DH_VERBOSE = 1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+DPKG_EXPORT_BUILDTOOLS = nonempty
+include /usr/share/dpkg/buildtools.mk
%:
dh $@
--- End Message ---
--- Begin Message ---
Source: bioawk
Source-Version: 1.0-4
Done: Nilesh Patra <[email protected]>
We believe that the bug you reported is fixed in the latest version of
bioawk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <[email protected]> (supplier of updated bioawk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 17 Mar 2021 22:23:42 +0530
Source: bioawk
Architecture: source
Version: 1.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Nilesh Patra <[email protected]>
Closes: 985410
Changes:
bioawk (1.0-4) unstable; urgency=medium
.
* d/p/cross.patch: Fix non-cross buildability
* Use dpkg buildtools to set CC and CC_FOR_BUILD
(Closes: #985410)
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