Your message dated Mon, 17 Jan 2022 23:33:39 +0000 with message-id <e1n9bvl-000cz4...@fasolo.debian.org> and subject line Bug#983979: fixed in bagel 1.2.2-3 has caused the Debian Bug report #983979, regarding bagel: ftbfs with GCC-11 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 983979: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=983979 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:bagel Version: 1.2.2-1 Severity: normal Tags: sid bookworm User: debian-...@lists.debian.org Usertags: ftbfs-gcc-11 [This bug is not targeted to the upcoming bullseye release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://people.debian.org/~doko/logs/20210228/filtered/gcc11/bagel_1.2.2-1_unstable_gcc11.log The last lines of the build log are at the end of this report. To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-11/porting_to.html GCC 11 defaults to the GNU++17 standard. If your package installs header files in /usr/include, please don't work around C++17 issues by choosing a lower C++ standard for the package build, but fix these issues to build with the C++17 standard. [...] libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c ztranspose.cc -o ztranspose.o /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o sparsematrix.lo sparsematrix.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c sparsematrix.cc -o sparsematrix.o /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o blocksparsematrix.lo blocksparsematrix.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c blocksparsematrix.cc -o blocksparsematrix.o /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o xyzfile.lo xyzfile.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c xyzfile.cc -o xyzfile.o /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o algo.lo algo.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c algo.cc -o algo.o /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o btas_interface.lo btas_interface.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c btas_interface.cc -o btas_interface.o /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o preallocarray.lo preallocarray.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c preallocarray.cc -o preallocarray.o /bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o sphharmonics.lo sphharmonics.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c sphharmonics.cc -o sphharmonics.o sphharmonics.cc: In member function ‘std::complex<double> bagel::SphHarmonics::ylm() const’: sphharmonics.cc:85:22: error: reference to ‘legendre’ is ambiguous 85 | const double plm = legendre.compute(l, am, cth); | ^~~~~~~~ In file included from /usr/include/c++/11/cmath:1927, from /usr/include/c++/11/complex:44, from ../../../src/util/math/sphharmonics.h:30, from sphharmonics.cc:28: /usr/include/c++/11/bits/specfun.h:1007:5: note: candidates are: ‘template<class _Tp> typename __gnu_cxx::__promote<_Tp>::__type std::legendre(unsigned int, _Tp)’ 1007 | legendre(unsigned int __l, _Tp __x) | ^~~~~~~~ sphharmonics.cc:33:23: note: ‘const bagel::Legendre legendre’ 33 | const static Legendre legendre; | ^~~~~~~~ sphharmonics.cc: In member function ‘double bagel::SphHarmonics::zlm() const’: sphharmonics.cc:112:22: error: reference to ‘legendre’ is ambiguous 112 | const double plm = legendre.compute(l, am, cth); | ^~~~~~~~ In file included from /usr/include/c++/11/cmath:1927, from /usr/include/c++/11/complex:44, from ../../../src/util/math/sphharmonics.h:30, from sphharmonics.cc:28: /usr/include/c++/11/bits/specfun.h:1007:5: note: candidates are: ‘template<class _Tp> typename __gnu_cxx::__promote<_Tp>::__type std::legendre(unsigned int, _Tp)’ 1007 | legendre(unsigned int __l, _Tp __x) | ^~~~~~~~ sphharmonics.cc:33:23: note: ‘const bagel::Legendre legendre’ 33 | const static Legendre legendre; | ^~~~~~~~ sphharmonics.cc: In member function ‘double bagel::SphHarmonics::zlm(int, int) const’: sphharmonics.cc:136:22: error: reference to ‘legendre’ is ambiguous 136 | const double plm = legendre.compute(l, am, cth); | ^~~~~~~~ In file included from /usr/include/c++/11/cmath:1927, from /usr/include/c++/11/complex:44, from ../../../src/util/math/sphharmonics.h:30, from sphharmonics.cc:28: /usr/include/c++/11/bits/specfun.h:1007:5: note: candidates are: ‘template<class _Tp> typename __gnu_cxx::__promote<_Tp>::__type std::legendre(unsigned int, _Tp)’ 1007 | legendre(unsigned int __l, _Tp __x) | ^~~~~~~~ sphharmonics.cc:33:23: note: ‘const bagel::Legendre legendre’ 33 | const static Legendre legendre; | ^~~~~~~~ make[5]: *** [Makefile:466: sphharmonics.lo] Error 1 make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/util/math' make[4]: *** [Makefile:462: all-recursive] Error 1 make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/util' make[3]: *** [Makefile:625: all-recursive] Error 1 make[3]: Leaving directory '/<<PKGBUILDDIR>>/src' make[2]: *** [Makefile:424: all-recursive] Error 1 make[2]: Leaving directory '/<<PKGBUILDDIR>>' make[1]: *** [Makefile:356: all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build: error: make -j1 returned exit code 2 make: *** [debian/rules:12: build] Error 25 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
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--- Begin Message ---Source: bagel Source-Version: 1.2.2-3 Done: Michael Banck <mba...@debian.org> We believe that the bug you reported is fixed in the latest version of bagel, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 983...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael Banck <mba...@debian.org> (supplier of updated bagel package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 18 Jan 2022 00:08:22 +0100 Source: bagel Architecture: source Version: 1.2.2-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Michael Banck <mba...@debian.org> Closes: 983979 Changes: bagel (1.2.2-3) unstable; urgency=medium . * debian/watch: Updated. * debian/control (Build-Depends): Removed libboost-python-dev and python3-dev, added python3-minimal. * debian/patches/fix_gcc_11_build_failure.patch: New patch, fixes build failure with G++-11. Taken from upstream commit 9ba401b2 (Closes: #983979). Checksums-Sha1: 3c9e25d7c0cbe14a34c64ad4fe25c0cea01cc021 2229 bagel_1.2.2-3.dsc f7cad6fae86b673815072d24269eb5858c22fe5e 8128 bagel_1.2.2-3.debian.tar.xz 9de2432acc3ee7f93dee31a01c9fbe57ddab6701 6115 bagel_1.2.2-3_source.buildinfo Checksums-Sha256: 3de25649d2c62b643370d245629809ab7b6d1ac0fa3f2bdb08c82ec0a10d9d9a 2229 bagel_1.2.2-3.dsc bbaf0d8b8aca15602cecc35224f8b47dc450b751fd964fce60c5c86c93d1bd6d 8128 bagel_1.2.2-3.debian.tar.xz f91d29251484f96a4fa106025f54da2eaee4199dd097646b03b848cd22e583fc 6115 bagel_1.2.2-3_source.buildinfo Files: 834a6d9661037d0bd1e6c836eeb0bae5 2229 science optional bagel_1.2.2-3.dsc 8502243e32133283642f2680757d648e 8128 science optional bagel_1.2.2-3.debian.tar.xz 22930b74a69e08a4b6ae5f71f6600ca5 6115 science optional bagel_1.2.2-3_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEnKh3dJ+rLk+paGLs3GhqJ7Q0gbAFAmHl9vAACgkQ3GhqJ7Q0 gbCZng/+J8NEBfDCAzZKvJ/FsSwz7AJao6f0yCVh/++l2TM2Z+EdRelMaUqbgD2y +XVZHB+UC1ZPMn8PkLpgjJhLr9BHhY1Cqxn3lOvP67mQKFXVFi7InpItSgm6adfH MC6W59/QMV1IXOMD9cCdXmIak2dHX9dsGBbE5EuI62yotEv03DrVT0rL0Hst7gbh ALlS6ApXyoyg9kfJh4Ozat5h+DMXcT13BohEHWSqAaANImcBUgpqbBJNoCycMn4z QCFZ2DOpPZSFa1GAERheLZuPUIivrPK3BYgC7FB7yePujcWD4WSK1yef5v6sMY3l yWM97Ecg7vhSeGCT9txO8HB4D3aEW2yA9WQw2A3yHSWc/MUA5n9jpsy63fUwEILD I7HQBpOqyTCsba5iRr6BfXedzseAeFA5PCFF9Nkux9CS5+EVsWXnL4w8njP6sAv7 panuC7s/obfS0WIGVu/1Lzx7gDNs0kHXRiMQFUNM+ypEh+A11ZwqTxRYtNiAifR7 ORZYypVaDkR4HNsfH36c2xFJtbLtUGYWH/Ahk/q6g0EgvoximZ24AOP6SkcZEZg5 XA4bn/9XkCOGgKTRDLBm6YxS+eTlr/+T349ptcNsWedpRD0pwuwJ7oyFMnMjCI7I MXxMoGnd4Rkdo8nP9ns3Mfre7bAGPiMC65EZjD8KBFspY8f5Bys= =yPpj -----END PGP SIGNATURE-----
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