Your message dated Mon, 23 May 2022 00:58:50 +0000
with message-id <[email protected]>
and subject line Bug#1008591: fixed in nvidia-cuda-toolkit 11.4.3-3
has caused the Debian Bug report #1008591,
regarding nvidia-openjdk-8-jre: java binary depending on non-available libc
version in Debian Bullseye
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1008591: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1008591
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: nvidia-openjdk-8-jre
Version: 9.+8u312-b07-1~11.2.2-3+deb11u1
Hello,
When using the latest version of the nvidia-openjdk-8-jre package in Debian
Bullseye (9.+8u312-b07-1~11.2.2-3+deb11u1) I receive the following error when
executing the "java" command:
debian@hostname:~$ java -version
Error: dl failure on line 894
Error: failed /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so,
because /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found
(required by /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so)
The above error message hints that the java binary now depends on GLIBC_2.32.
However, when looking at the package dependencies it lists a dependency in
libc6 >= 2.29:
debian@hostname:~$ dpkg --status nvidia-openjdk-8-jre
Package: nvidia-openjdk-8-jre
Status: install ok installed
Priority: optional
Section: non-free/java
Installed-Size: 100973
Maintainer: Debian NVIDIA Maintainers <[email protected]>
Architecture: amd64
Source: nvidia-cuda-toolkit (11.2.2-3+deb11u1)
Version: 9.+8u312-b07-1~11.2.2-3+deb11u1
Replaces: openjdk-8-jre, openjdk-8-jre-headless
Depends: libasound2 (>= 1.0.16), libc6 (>= 2.29), libfreetype6 (>= 2.3.5),
libgcc-s1 (>= 3.0), libgif7 (>= 5.1), libjpeg62-turbo (>= 1.3.1), liblcms2-2
(>= 2.2+git20110628), libpcsclite1 (>= 1.3.0), libpng16-16 (>= 1.6.2-1),
libpulse0 (>= 0.99.1), libstdc++6 (>= 4.1.1), libx11-6, libxext6, libxi6,
libxrender1, libxtst6, zlib1g (>= 1:1.1.4)
Conflicts: openjdk-8-jre, openjdk-8-jre-headless
Description: Obsolete OpenJDK Java runtime, for NVIDIA applications
Full Java runtime environment - needed for executing Java GUI and Webstart
programs, using Hotspot JIT.
.
This package provides OpenJDK-8 JRE binaries built on Debian for use with
the NVIDIA CUDA Toolkit. This obsolete version is needed for
nvidia-visual-profiler.
Homepage: https://developer.nvidia.com/cuda-zone
I am currently running an up-to-date Debian Bullseye installation:
debian@hostname:~$ sudo apt-get update
Hit:1 http://security.debian.org/debian-security bullseye-security InRelease
Hit:2 http://deb.debian.org/debian bullseye InRelease
Hit:3 http://deb.debian.org/debian bullseye-updates InRelease
Hit:4 http://deb.debian.org/debian bullseye-backports InRelease
Reading package lists... Done
debian@hostname:~$ sudo apt-get upgrade
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
Calculating upgrade... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
debian@hostname:~$ sudo apt-get dist-upgrade
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
Calculating upgrade... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
So I am running the latest version of the libc package which appears to be 2.31:
debian@hostname:~$ ls -l /lib/*/libc.so.6
lrwxrwxrwx 1 root root 12 Mar 17 21:37 /lib/x86_64-linux-gnu/libc.so.6 ->
libc-2.31.so
debian@hostname:~$ apt show libc6 | grep ^Version
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Version: 2.31-13+deb11u3
For additional testing purposes, I have removed the
9.+8u312-b07-1~11.2.2-3+deb11u1 version of the package and installed a previous
version (9.+8u292-b10-3~11.2.2-3) which I obtained from the Debian snapshot
project using following URL:
https://snapshot.debian.org/archive/debian/20210724T084841Z/pool/non-free/n/nvidia-cuda-toolkit/nvidia-openjdk-8-jre_9.%2B8u292-b10-3%7E11.2.2-3_amd64.deb
I know this version works as I have it still in an internal Aptly repository,
however it seems that that package recently has been removed from the official
Debian repositories
1: Running the latest version of the nvidia-openjdk-8-jre package:
debian@hostname:~$ dpkg --status nvidia-openjdk-8-jre
Package: nvidia-openjdk-8-jre
Status: install ok installed
Priority: optional
Section: non-free/java
Installed-Size: 100973
Maintainer: Debian NVIDIA Maintainers <[email protected]>
Architecture: amd64
Source: nvidia-cuda-toolkit (11.2.2-3+deb11u1)
Version: 9.+8u312-b07-1~11.2.2-3+deb11u1
Replaces: openjdk-8-jre, openjdk-8-jre-headless
Depends: libasound2 (>= 1.0.16), libc6 (>= 2.29), libfreetype6 (>= 2.3.5),
libgcc-s1 (>= 3.0), libgif7 (>= 5.1), libjpeg62-turbo (>= 1.3.1), liblcms2-2
(>= 2.2+git20110628), libpcsclite1 (>= 1.3.0), libpng16-16 (>= 1.6.2-1),
libpulse0 (>= 0.99.1), libstdc++6 (>= 4.1.1), libx11-6, libxext6, libxi6,
libxrender1, libxtst6, zlib1g (>= 1:1.1.4)
Conflicts: openjdk-8-jre, openjdk-8-jre-headless
Description: Obsolete OpenJDK Java runtime, for NVIDIA applications
Full Java runtime environment - needed for executing Java GUI and Webstart
programs, using Hotspot JIT.
.
This package provides OpenJDK-8 JRE binaries built on Debian for use with
the NVIDIA CUDA Toolkit. This obsolete version is needed for
nvidia-visual-profiler.
Homepage: https://developer.nvidia.com/cuda-zone
2: Verify that java is not working:
debian@hostname:~$ which java
/usr/bin/java
debian@hostname:~$ ls -alh /usr/bin/java
lrwxrwxrwx 1 root root 22 Mar 28 07:14 /usr/bin/java -> /etc/alternatives/java
debian@hostname:~$ ls -alh /etc/alternatives/java
lrwxrwxrwx 1 root root 42 Mar 28 07:14 /etc/alternatives/java ->
/usr/lib/jvm/java-8-openjdk-amd64/bin/java
debian@hostname:~$ java -version
Error: dl failure on line 894
Error: failed /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so,
because /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found
(required by /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/amd64/server/libjvm.so)
3: Remove the nvidia-openjdk-8-jre package
debian@hostname:~$ sudo apt-get purge nvidia-openjdk-8-jre
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
The following packages were automatically installed and are no longer required:
alsa-topology-conf alsa-ucm-conf libasound2 libasound2-data libasyncns0
libflac8 libgif7 liblcms2-2 libogg0 libopus0 libpcsclite1 libpulse0 libsndfile1
libvorbis0a libvorbisenc2 libxext6 libxi6 libxrender1 libxtst6 x11-common
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
nvidia-openjdk-8-jre*
0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
After this operation, 103 MB disk space will be freed.
Do you want to continue? [Y/n] y
apt-listchanges: Can't set locale; make sure $LC_* and $LANG are correct!
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_TIME = "en_GB.UTF-8",
LC_MONETARY = "en_GB.UTF-8",
LC_ADDRESS = "en_GB.UTF-8",
LC_TELEPHONE = "en_GB.UTF-8",
LC_NAME = "en_GB.UTF-8",
LC_MEASUREMENT = "en_GB.UTF-8",
LC_IDENTIFICATION = "en_GB.UTF-8",
LC_NUMERIC = "en_GB.UTF-8",
LC_PAPER = "en_GB.UTF-8",
LANG = "C.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to a fallback locale ("C.UTF-8").
(Reading database ... 33654 files and directories currently installed.)
Removing nvidia-openjdk-8-jre (9.+8u312-b07-1~11.2.2-3+deb11u1) ...
Processing triggers for libc-bin (2.31-13+deb11u3) ...
4: Installing the previous version from the snapshot project
debian@hostname:~$ wget
https://snapshot.debian.org/archive/debian/20210724T084841Z/pool/non-free/n/nvidia-cuda-toolkit/nvidia-openjdk-8-jre_9.%2B8u292-b10-3%7E11.2.2-3_amd64.deb
--2022-03-29 07:49:56--
https://snapshot.debian.org/archive/debian/20210724T084841Z/pool/non-free/n/nvidia-cuda-toolkit/nvidia-openjdk-8-jre_9.%2B8u292-b10-3~11.2.2-3_amd64.deb
Resolving snapshot.debian.org (snapshot.debian.org)... 193.62.202.27,
185.17.185.185, 2001:1af8:4020:b030:deb::185, ...
Connecting to snapshot.debian.org (snapshot.debian.org)|193.62.202.27|:443...
connected.
HTTP request sent, awaiting response... 200 OK
Length: 28086256 (27M)
Saving to: 'nvidia-openjdk-8-jre_9.+8u292-b10-3~11.2.2-3_amd64.deb'
nvidia-openjdk-8-jre_9.+8u292-b10-3~11.2.2-3_amd64.deb
100%[==========================================================================================================================================================================>]
26.78M 107MB/s in 0.3s
2022-03-29 07:49:57 (107 MB/s) -
'nvidia-openjdk-8-jre_9.+8u292-b10-3~11.2.2-3_amd64.deb' saved
[28086256/28086256]
debian@hostname:~$ sudo dpkg -i
nvidia-openjdk-8-jre_9.+8u292-b10-3~11.2.2-3_amd64.deb
Selecting previously unselected package nvidia-openjdk-8-jre.
(Reading database ... 33444 files and directories currently installed.)
Preparing to unpack nvidia-openjdk-8-jre_9.+8u292-b10-3~11.2.2-3_amd64.deb ...
Unpacking nvidia-openjdk-8-jre (9.+8u292-b10-3~11.2.2-3) ...
Setting up nvidia-openjdk-8-jre (9.+8u292-b10-3~11.2.2-3) ...
Processing triggers for libc-bin (2.31-13+deb11u3) ...
5: Verify that java is working again:
debian@hostname:~$ which java
/usr/bin/java
debian@hostname:~$ ls -alh /usr/bin/java
lrwxrwxrwx 1 root root 22 Mar 28 07:14 /usr/bin/java -> /etc/alternatives/java
debian@hostname:~$ ls -alh /etc/alternatives/java
lrwxrwxrwx 1 root root 42 Mar 28 07:14 /etc/alternatives/java ->
/usr/lib/jvm/java-8-openjdk-amd64/bin/java
debian@hostname:~$ java -version
openjdk version "1.8.0_292"
OpenJDK Runtime Environment (build 1.8.0_292-8u292-b10-3-b10)
OpenJDK 64-Bit Server VM (build 25.292-b10, mixed mode)
I believe that the latest version of the nvidia-openjdk-8-jre package has been
compiled with a higher libc version than the one which is available in the
official Debian Bullseye repositories and I suppose the fix would be to
re-compile the package with a lower libc version in order to ensure
compatibility.
I hope the above provides adequate information to verify and resolve this bug.
However, if additional information is required, please let me know!
Kind Regards,
Peter
--- End Message ---
--- Begin Message ---
Source: nvidia-cuda-toolkit
Source-Version: 11.4.3-3
Done: Andreas Beckmann <[email protected]>
We believe that the bug you reported is fixed in the latest version of
nvidia-cuda-toolkit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Beckmann <[email protected]> (supplier of updated nvidia-cuda-toolkit
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 23 May 2022 01:30:18 +0200
Source: nvidia-cuda-toolkit
Architecture: source
Version: 11.4.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian NVIDIA Maintainers <[email protected]>
Changed-By: Andreas Beckmann <[email protected]>
Closes: 1008591 1009719 1011114
Changes:
nvidia-cuda-toolkit (11.4.3-3) unstable; urgency=medium
.
* Switch back to gcc-10 as default host compiler, since some STL headers
fail to compile with nvcc using g++ 11.2 (but not 11.1) as host compiler.
* Add superficial autopkgtest checking the usability of the STL headers in
host code compiled with nvcc (cf. #1006962).
* nsight-compute: Move the 'sections' folder to a multiarch location.
(Closes: #1009719)
* Check usability of the java binary. (Closes: #1008591)
* Use a snapshot of openjdk-8-jre (8u332-ga-1).
* nsight-systems: Drop unused libraries.
* Use system libssh-4 (and therefore system openssl). (Closes: #1011114)
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