Your message dated Fri, 24 Jun 2022 14:48:37 +0000
with message-id <[email protected]>
and subject line Bug#1009276: Removed package(s) from unstable
has caused the Debian Bug report #504500,
regarding fsl: feat fails with design.fsf from 4.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
504500: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=504500
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: fsl
Version: 4.1.1-1~etch.apsy1
Severity: important
Finally I've decided to move to fsl 4.1.1 from 4.0...
We have quite a few analyses done with previous versions and usual
workflow is to have pregenerated (per subject) design.fsf files and feed
them into command line 'feat' tool (instead of going through graphical
Feat).
Unfortunately first level analysis using 4.1.1's feat (v 5.98) ran
on design.fsf from previous version (FEAT 5.63) failed. Excerpts from
report_log.html:
,---
| /usr/share/fsl/bin/feat_model design
| Can't find key fmri(evs_vox)
`---
which leads to absent design.mat, thus film_gls fails later on with
,---
| /usr/share/fsl/bin/film_gls -rn stats -sa -ms 5 filtered_func_data design.mat
1000.0
| Log directory is: stats
|
|
| An exception has been thrown
| Unable to open design.mat
| Error: FILM did not complete - it probably ran out of memory
`---
Adding
,---
| set fmri(evs_vox) 0
`---
into design.fsf seems to help at this level, but I am not sure if it is not the
same cause (some additional options introduced in feat from FSL 4.1.1) which
leads to the failed 2nd level analysis which will be reported in the separate
bugreport.
I think that assuming defaults for freshly introduced options in
design.fsf is an important issue since it forbids bulk analysis of the
data from previous versions of FSL (even of the same major release FSL
4)
-- System Information:
Debian Release: 4.0
APT prefers stable
APT policy: (500, 'stable')
Architecture: amd64 (x86_64)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.18-5-amd64
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Versions of packages fsl depends on:
ii bc 1.06-20 The GNU bc arbitrary precision cal
ii dc 1.06-20 The GNU dc arbitrary precision rev
ii dillo [www-br 0.8.5-4.1 Small and fast web browser
ii elinks [www-b 0.11.1-1.2etch1 advanced text-mode WWW browser
ii elvis [www-br 2.2.0-8 powerful clone of the vi/ex text e
ii fslview 3.0+4.0.2-3~etch.apsy1 viewer for (f)MRI and DTI data
ii iceape-browse 1.0.13~pre080323b-0etch3 Iceape Navigator (Internet browser
ii iceweasel [ww 2.0.0.17-0etch1 lightweight web browser based on M
ii konqueror [ww 4:3.5.5a.dfsg.1-6etch2 KDE's advanced file manager, web b
ii libc6 2.3.6.ds1-13etch7 GNU C Library: Shared libraries
ii libgcc1 1:4.1.1-21 GCC support library
ii libgd2-xpm 2.0.36~rc1~dfsg-3~etch1 GD Graphics Library version 2
ii libgdchart-gd 0.11.5-3 Generate graphs using the GD libra
ii libnewmat10 1.10.4-2 matrix manipulations C++ library
ii libnifti1 1.1.0-2~etch.apsy1 IO libraries for the NIfTI-1 data
ii libpng12-0 1.2.15~beta5-1 PNG library - runtime
ii libstdc++6 4.1.1-21 The GNU Standard C++ Library v3
ii links [www-br 0.99+1.00pre12-1.1 Character mode WWW browser
ii lynx [www-bro 2.8.5-2sarge2.2 Text-mode WWW Browser
ii mozilla-firef 2.0.0.17-0etch1 Transition package for iceweasel r
ii tcl8.4 8.4.12-1.1 Tcl (the Tool Command Language) v8
ii tcsh [c-shell 6.14.00-7 TENEX C Shell, an enhanced version
ii tk8.4 8.4.12-1etch2 Tk toolkit for Tcl and X11, v8.4 -
ii w3-el-e21 [ww 4.0pre.2001.10.27.nodocs-4 Web browser for GNU Emacs 21
ii w3m [www-brow 0.5.1-5.1 WWW browsable pager with excellent
ii xemacs21-mule 21.4.19-2 highly customizable text editor --
ii zlib1g 1:1.2.3-13 compression library - runtime
Versions of packages fsl recommends:
ii fsl-atlases 4.1.0-1 MNI152 standard space brain atlase
ii fsl-doc 4.1.1-1~etch.apsy1 documentation for FSL
-- no debconf information
--- End Message ---
--- Begin Message ---
Version: 5.0.8-6+rm
Dear submitter,
as the package fsl has just been removed from the Debian archive
unstable we hereby close the associated bug reports. We are sorry
that we couldn't deal with your issue properly.
For details on the removal, please see https://bugs.debian.org/1009276
The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.
Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.
This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
[email protected].
Debian distribution maintenance software
pp.
Thorsten Alteholz (the ftpmaster behind the curtain)
--- End Message ---
