Your message dated Wed, 20 Jul 2022 07:34:50 +0000
with message-id <[email protected]>
and subject line Bug#1015577: fixed in parsinsert 1.04-11
has caused the Debian Bug report #1015577,
regarding parsinsert: ftbfs with LTO (link time optimization) enabled
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1015577: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1015577
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:parsinsert
Version: 1.04-10
Severity: minor
Tags: sid bookworm
User: [email protected]
Usertags: ftbfs-lto
This package currently fails to build (at least on the amd64
architecture) with link time optimizations enabled. For a background
for LTO please see
https://wiki.debian.org/ToolChain/LTO
The goal is to enable this optimization by default in an upcoming
Debian release in dpkg-buildflags for 64bit architectures. The goal
is to get this package to build with link time optimizations, or to
explicitly disable link time optimizations for this package build.
To reproduce the build failure, enable the lto optimization in
testing/unstable by adding "optimize=+lto" to DEB_BUILD_MAINT_OPTIONS
in the debian/rules file, or if this macro is unset, just set it:
export DEB_BUILD_MAINT_OPTIONS = optimize=+lto
Please try to fix the build with lto enabled, fixing the packaging or
forwarding the issue upstream. If the issue cannot be fixed,
explicitly disallow building the package with lto by adding to your
rules file:
export DEB_BUILD_MAINT_OPTIONS = optimize=-lto
or adding that string to your existing setting of DEB_BUILD_MAINT_OPTIONS.
The full build log can be found at:
http://qa-logs.debian.net/2022/06/09/dpkglto/parsinsert_1.04-10_unstable_dpkglto.log
The last lines of the build log are at the end of this report.
[...]
======================================================================
Insertion: [ 93086] [ 1173 sites]
0 [100%]
[136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
0 ( 0 diffs, 0 partials, 0 indels)
[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Assigned
Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Correct
Taxonomy:[Archaea;Euryarchaeota;Thermoplasmata;Thermoplasmatales;Thermoplasmataceae;Thermoplasma]
======================================================================
Insertion: [ 93354] [ 1218 sites]
0 [100%]
[136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
0 ( 0 diffs, 0 partials, 0 indels)
[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Assigned
Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Correct Taxonomy:[Bacteria;Bacteroidetes;Sphingobacteria;Sphingobacteriales]
======================================================================
Insertion: [ 9475] [ 1283 sites]
0 [100%]
[136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
0 ( 0 diffs, 0 partials, 0 indels)
[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Assigned
Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Correct
Taxonomy:[Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Actinobacillus]
======================================================================
Insertion: [ 95741] [ 1280 sites]
0 [100%]
[136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
0 ( 0 diffs, 0 partials, 0 indels)
[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Assigned
Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Correct
Taxonomy:[Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Rhodobiaceae;Parvibaculum]
======================================================================
Insertion: [ 99538] [ 1184 sites]
0 [100%]
[136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
0 ( 0 diffs, 0 partials, 0 indels)
[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Assigned
Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Correct
Taxonomy:[Bacteria;Bacteroidetes;Flavobacteria;Flavobacteriales;Flavobacteriaceae;Chryseobacterium]
======================================================================
Insertion: [ 99764] [ 1261 sites]
0 [100%]
[136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
0 ( 0 diffs, 0 partials, 0 indels)
[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Assigned
Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
Correct
Taxonomy:[Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Brucellaceae;Brucella]
Taxonomies List:
[root] 957
[Bacteria] 957
[Actinobacteria] 957
[Actinobacteria] 957
[Acidimicrobidae] 957
[Acidimicrobiales] 957
[Acidimicrobineae] 957
[Acidimicrobiaceae] 957
[Acidimicrobium] 957
Writing Newick tree file: [set1000.tree]
Rank Matches:
_________Precision________ __________Recall__________
Domain: 957 938 ( 98.01%) 938 957 ( 98.01%)
Phylum: 957 83 ( 8.67%) 83 957 ( 8.67%)
Class: 957 83 ( 8.67%) 83 957 ( 8.67%)
Order: 915 0 ( 0.00%) 0 915 ( 0.00%)
Family: 876 0 ( 0.00%) 0 876 ( 0.00%)
Genus: 706 0 ( 0.00%) 0 706 ( 0.00%)
Species: 53 0 ( 0.00%) 0 53 ( 0.00%)
Insert Time = 15, 229680 per hour
Process Completed: 18 sec
incorrect result
make[1]: *** [debian/rules:27: override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:15: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: parsinsert
Source-Version: 1.04-11
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
parsinsert, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated parsinsert package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 20 Jul 2022 09:03:42 +0200
Source: parsinsert
Architecture: source
Version: 1.04-11
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1015577
Changes:
parsinsert (1.04-11) unstable; urgency=medium
.
* Disable link time optimization since it results in test suite failure
Closes: #1015577
* Standards-Version: 4.6.1 (routine-update)
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--- End Message ---
