Your message dated Mon, 17 Jul 2023 11:34:05 +0000
with message-id <[email protected]>
and subject line Bug#1037708: fixed in kmc 3.2.2+dfsg-1
has caused the Debian Bug report #1037708,
regarding kmc: ftbfs with GCC-13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1037708: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037708
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:kmc
Version: 3.2.1+dfsg-1
Severity: normal
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-13
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/kmc_3.2.1+dfsg-1_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html
[...]
from kmc_core/bkb_writer.cpp:11:
kmc_core/critical_error_handler.h: In member function ‘void
CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member
of ‘std’
77 | throw std::runtime_error(msg);
| ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in
header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
6 | #include <condition_variable>
+++ |+#include <stdexcept>
7 |
In file included from kmc_core/queues.h:23,
from kmc_core/params.h:16,
from kmc_core/fastq_reader.h:15,
from kmc_core/fastq_reader.cpp:13:
kmc_core/critical_error_handler.h: In member function ‘void
CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member
of ‘std’
77 | throw std::runtime_error(msg);
| ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in
header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
6 | #include <condition_variable>
+++ |+#include <stdexcept>
7 |
In file included from kmc_core/queues.h:23,
from kmc_core/params.h:16,
from kmc_core/develop.cpp:3:
kmc_core/critical_error_handler.h: In member function ‘void
CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member
of ‘std’
77 | throw std::runtime_error(msg);
| ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in
header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
6 | #include <condition_variable>
+++ |+#include <stdexcept>
7 |
make[2]: *** [Makefile:98: kmc_core/mem_disk_file.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from kmc_core/queues.h:23,
from kmc_core/params.h:16,
from kmc_core/kb_completer.h:14,
from kmc_core/kb_completer.cpp:12:
kmc_core/critical_error_handler.h: In member function ‘void
CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member
of ‘std’
77 | throw std::runtime_error(msg);
| ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in
header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
6 | #include <condition_variable>
+++ |+#include <stdexcept>
7 |
In file included from kmc_core/queues.h:23,
from kmc_core/params.h:16,
from kmc_core/kb_storer.h:15,
from kmc_core/kb_storer.cpp:12:
kmc_core/critical_error_handler.h: In member function ‘void
CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member
of ‘std’
77 | throw std::runtime_error(msg);
| ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in
header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
6 | #include <condition_variable>
+++ |+#include <stdexcept>
7 |
make[2]: *** [Makefile:98: kmc_core/bkb_writer.o] Error 1
make[2]: *** [Makefile:98: kmc_core/bkb_reader.o] Error 1
make[2]: *** [Makefile:98: kmc_core/develop.o] Error 1
make[2]: *** [Makefile:98: kmc_core/fastq_reader.o] Error 1
make[2]: *** [Makefile:98: kmc_core/kb_storer.o] Error 1
make[2]: *** [Makefile:98: kmc_core/kb_completer.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j8 "INSTALL=install --strip-program=true" SIMD=1
returned exit code 2
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:17: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: kmc
Source-Version: 3.2.2+dfsg-1
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
kmc, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated kmc package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 17 Jul 2023 12:35:26 +0200
Source: kmc
Architecture: source
Version: 3.2.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1037708
Changes:
kmc (3.2.2+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
* Use secure URI in Homepage field.
* use-shared-libs patch: refresh; forward not-needed.
* makefile.patch: refresh; forwarding not-needed.
* disable-python-bindings.patch: refresh.
* simde patch: refresh.
* support-mixed-march.patch: refresh.
* gcc-13.patch: new: fix build failures with gcc-13. (Closes: #1037708)
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