Your message dated Tue, 08 Aug 2023 06:03:51 +0000
with message-id <[email protected]>
and subject line Bug#1043025: fixed in ivar 1.4.2+dfsg-2
has caused the Debian Bug report #1043025,
regarding ivar: autopkgtest failure on i386
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1043025: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1043025
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ivar
Version: 1.4.2+dfsg-1
Severity: serious
Tags: patch
Control: block 1037700 by -1
https://ci.debian.net/data/autopkgtest/testing/i386/i/ivar/36393644/log.gz
...
29s 132,133c132,133
29s < Consensus_ZI-27_threshold_0_quality_20 130 N G 0
0 0 7 6 37 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s < Consensus_ZI-27_threshold_0_quality_20 131 N A 0
0 0 7 6 37 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s ---
29s > Consensus_ZI-27_threshold_0_quality_20 130 N G 0
0 0 7 6 38 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s > Consensus_ZI-27_threshold_0_quality_20 131 N A 0
0 0 7 6 38 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s 169c169
29s < Consensus_ZI-27_threshold_0_quality_20 165 N T 0
0 0 7 6 37 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s ---
29s > Consensus_ZI-27_threshold_0_quality_20 165 N T 0
0 0 7 6 38 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s 174c174
29s < Consensus_ZI-27_threshold_0_quality_20 170 N G 0
0 0 7 6 37 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s ---
29s > Consensus_ZI-27_threshold_0_quality_20 170 N G 0
0 0 7 6 38 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s 205c205
29s < Consensus_ZI-27_threshold_0_quality_20 201 N A 0
0 0 7 6 37 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s ---
29s > Consensus_ZI-27_threshold_0_quality_20 201 N A 0
0 0 7 6 38 1 7 0.000582751 TRUE
NA NA NA NA NA NA
29s 4376c4376
29s < Consensus_ZI-27_threshold_0_quality_20 7015 N G 0
0 0 8 1 37 1 8 0.0001554 TRUE
NA NA NA NA NA NA
29s ---
29s > Consensus_ZI-27_threshold_0_quality_20 7015 N G 0
0 0 8 1 38 1 8 0.0001554 TRUE
NA NA NA NA NA NA
29s 4379c4379
29s < Consensus_ZI-27_threshold_0_quality_20 7018 N G 0
0 0 8 1 36 1 8 0.0001554 TRUE
NA NA NA NA NA NA
29s ---
29s > Consensus_ZI-27_threshold_0_quality_20 7018 N G 0
0 0 8 1 37 1 8 0.0001554 TRUE
NA NA NA NA NA NA
29s 4405c4405
29s < Consensus_ZI-27_threshold_0_quality_20 7044 N A 0
0 0 8 1 37 1 8 0.0001554 TRUE
NA NA NA NA NA NA
29s ---
29s > Consensus_ZI-27_threshold_0_quality_20 7044 N A 0
0 0 8 1 38 1 8 0.0001554 TRUE
NA NA NA NA NA NA
29s 4447c4447
29s < Consensus_ZI-27_threshold_0_quality_20 7086 N A 0
0 0 8 2 35 1 8 0.0001554 TRUE
NA NA NA NA NA NA
29s ---
29s > Consensus_ZI-27_threshold_0_quality_20 7086 N A 0
0 0 8 2 36 1 8 0.0001554 TRUE
NA NA NA NA NA NA
29s autopkgtest [15:35:51]: test run-unit-test: -----------------------]
29s run-unit-test FAIL non-zero exit status 1
The fix is attached.
For background see the first bullet point in the C++ section of
https://gcc.gnu.org/gcc-13/changes.html
Description: Remove -std=c++11 to fix autopkgtest failure with gcc 13
--- ivar-1.4.2+dfsg.orig/src/Makefile.am
+++ ivar-1.4.2+dfsg/src/Makefile.am
@@ -1,6 +1,6 @@
LIBS = -lhts -lz -lpthread
-CXXFLAGS += -v -g -std=c++11 -Wall -Wextra -Werror
+CXXFLAGS += -v -g -Wall -Wextra -Werror
# this lists the binaries to produce, the (non-PHONY, binary) targets in
# the previous manual Makefile
--- ivar-1.4.2+dfsg.orig/tests/Makefile.am
+++ ivar-1.4.2+dfsg/tests/Makefile.am
@@ -1,6 +1,6 @@
LIBS = -lhts -lz -lpthread
-CXXFLAGS += -g -std=c++11 -Wall -Wextra -Werror
+CXXFLAGS += -g -Wall -Wextra -Werror
TESTS = check_primer_trim check_trim check_quality_trim check_consensus
check_allele_depth check_consensus_threshold check_consensus_min_depth
check_consensus_seq_id check_primer_bed check_getmasked check_removereads
check_variants check_common_variants check_unpaired_trim
check_primer_trim_edge_cases check_isize_trim check_interval_tree
check_amplicon_search check_consensus_min_insert_threshold
check_PROGRAMS = check_primer_trim check_trim check_quality_trim
check_consensus check_allele_depth check_consensus_threshold
check_consensus_min_depth check_consensus_seq_id check_primer_bed
check_getmasked check_removereads check_variants check_common_variants
check_unpaired_trim check_primer_trim_edge_cases check_isize_trim
check_interval_tree check_amplicon_search check_consensus_min_insert_threshold
--- End Message ---
--- Begin Message ---
Source: ivar
Source-Version: 1.4.2+dfsg-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ivar, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated ivar package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 08 Aug 2023 07:50:30 +0200
Source: ivar
Architecture: source
Version: 1.4.2+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1043025
Changes:
ivar (1.4.2+dfsg-2) unstable; urgency=medium
.
[ Adrian Bunk ]
* Remove -std=c++11 to fix autopkgtest failure with gcc 13
Closes: #1043025
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--- End Message ---
