Your message dated Tue, 24 Oct 2023 21:15:14 +0000
with message-id <[email protected]>
and subject line Bug#1049672: fixed in tnseq-transit 3.3.1-1
has caused the Debian Bug report #1049672,
regarding tnseq-transit: Fails to build binary packages again after successful
build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1049672: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1049672
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: tnseq-transit
Version: 3.3.0-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to do build a binary-only build (not source) after a
successful build (dpkg-buildpackage ; dpkg-buildpackage -b).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -b
> ---------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package tnseq-transit
> dpkg-buildpackage: info: source version 3.3.0-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Ãtienne Mollier
> <[email protected]>
> dpkg-source --before-build .
> dpkg-buildpackage: info: host architecture amd64
> debian/rules clean
> dh clean --with python3 --buildsystem=pybuild
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_clean
> I: pybuild base:291: python3.11 setup.py clean
> /usr/lib/python3/dist-packages/setuptools/dist.py:745:
> SetuptoolsDeprecationWarning: Invalid dash-separated options
> !!
>
>
> ********************************************************************************
> Usage of dash-separated 'description-file' will not be supported in
> future
> versions. Please use the underscore name 'description_file' instead.
>
> By 2023-Sep-26, you need to update your project and remove deprecated
> calls
> or your builds will no longer be supported.
>
> See
> https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for
> details.
>
> ********************************************************************************
>
> !!
> opt = self.warn_dash_deprecation(opt, section)
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build' (and everything
> under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
> rm -rf tests_invalid_data
> rm -rf tnseq_transit.egg-info
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean -O--buildsystem=pybuild
> dh_clean -O--buildsystem=pybuild
> debian/rules binary
> dh binary --with python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> debian/rules override_dh_auto_configure
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> mkdir -p tests_invalid_data
> mv tests/H37Rv.fna tests_invalid_data
> mv: cannot stat 'tests/H37Rv.fna': No such file or directory
> make[1]: *** [debian/rules:18: override_dh_auto_configure] Error 1
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> make: *** [debian/rules:9: binary] Error 2
> dpkg-buildpackage: error: debian/rules binary subprocess returned exit status
> 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -b' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/16/tnseq-transit_3.3.0-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: tnseq-transit
Source-Version: 3.3.1-1
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
tnseq-transit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated tnseq-transit
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 24 Oct 2023 22:03:54 +0200
Source: tnseq-transit
Architecture: source
Version: 3.3.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1047512 1049672
Changes:
tnseq-transit (3.3.1-1) unstable; urgency=medium
.
* New upstream version 3.3.1
* skip_test_requiring_non_existing_input_data.patch: forwarding not needed.
* d/clean: cleanup test artifacts. (Closes: #1047512)
* d/rules: verify symlink is dangling before move.
tests/H37Rv.fna is a dangling symlink in upstream tarball, and it is
causing test failures so needs to be moved away. The move causes
subsequent builds to fail, so first check whether the link still
exists, and is still dangling. As a side effect, the test will come
back by itself when the link is repaired eventually. (Closes: #1049672)
* fix_problematic_comparison.patch: typo in description.
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tnseq-transit_3.3.1-1.dsc
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tnseq-transit_3.3.1.orig.tar.gz
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--- End Message ---
