Your message dated Tue, 31 Oct 2023 17:47:48 +0000
with message-id <[email protected]>
and subject line Bug#1049497: fixed in python-dendropy 4.6.1-1
has caused the Debian Bug report #1049497,
regarding python-dendropy: Fails to build binary packages again after
successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1049497: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1049497
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-dendropy
Version: 4.5.2-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to do build a binary-only build (not source) after a
successful build (dpkg-buildpackage ; dpkg-buildpackage -b).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -b
> -------------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package python-dendropy
> dpkg-buildpackage: info: source version 4.5.2-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Nilesh Patra <[email protected]>
> dpkg-source --before-build .
> dpkg-buildpackage: info: host architecture amd64
> debian/rules clean
> dh clean --with python3 --buildsystem=pybuild
> dh_auto_clean -O--buildsystem=pybuild
> I: pybuild base:291: python3.11 setup.py clean
> -setup.py: DendroPy version 4.5.2
> -setup.py: using setuptools
> ('/usr/lib/python3/dist-packages/setuptools/__init__.py')
> -setup.py: searching for packages
> -setup.py: packages identified:
> - dendropy
> - dendropy.utility
> - dendropy.calculate
> - dendropy.simulate
> - dendropy.interop
> - dendropy.legacy
> - dendropy.mathlib
> - dendropy.dataio
> - dendropy.datamodel
> - dendropy.model
> - dendropy.utility.libexec
> -setup.py: scripts identified:
> - applications/sumtrees/sumtrees.py
> - applications/sumlabels/sumlabels.py
> - applications/dendropy-format/dendropy-format
> -setup.py: setuptools command extensions are available
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build' (and
> everything under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
> dh_autoreconf_clean -O--buildsystem=pybuild
> dh_clean -O--buildsystem=pybuild
> debian/rules binary
> dh binary --with python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:291: python3.11 setup.py config
> -setup.py: DendroPy version 4.5.2
> -setup.py: using setuptools
> ('/usr/lib/python3/dist-packages/setuptools/__init__.py')
> -setup.py: searching for packages
> -setup.py: packages identified:
> - dendropy
> - dendropy.utility
> - dendropy.calculate
> - dendropy.simulate
> - dendropy.interop
> - dendropy.legacy
> - dendropy.mathlib
> - dendropy.dataio
> - dendropy.datamodel
> - dendropy.model
> - dendropy.utility.libexec
> -setup.py: scripts identified:
> - applications/sumtrees/sumtrees.py
> - applications/sumlabels/sumlabels.py
> - applications/dendropy-format/dendropy-format
> -setup.py: setuptools command extensions are available
> running config
> dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:291: /usr/bin/python3 setup.py build
> -setup.py: DendroPy version 4.5.2
> -setup.py: using setuptools
> ('/usr/lib/python3/dist-packages/setuptools/__init__.py')
> -setup.py: searching for packages
> -setup.py: packages identified:
> - dendropy
> - dendropy.utility
> - dendropy.calculate
> - dendropy.simulate
> - dendropy.interop
> - dendropy.legacy
> - dendropy.mathlib
> - dendropy.dataio
> - dendropy.datamodel
> - dendropy.model
> - dendropy.utility.libexec
> -setup.py: scripts identified:
> - applications/sumtrees/sumtrees.py
> - applications/sumlabels/sumlabels.py
> - applications/dendropy-format/dendropy-format
> -setup.py: setuptools command extensions are available
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy
> copying src/dendropy/__main__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy
> copying src/dendropy/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/deprecate.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/debug.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/constants.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/bibtex.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/bitprocessing.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/vcsinfo.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/processio.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/cli.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/container.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/filesys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/error.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/messaging.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/urlio.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/timeprocessing.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/metavar.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/terminal.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/textprocessing.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/profiledistance.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/combinatorics.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/statistics.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/treesum.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/treemeasure.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/probability.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/treecompare.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/popgenstat.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/phylogeneticdistance.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/mathfn.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/treescore.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> copying src/dendropy/simulate/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> copying src/dendropy/simulate/treesim.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> copying src/dendropy/simulate/popgensim.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> copying src/dendropy/simulate/charsim.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/biopython.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/muscle.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/ete.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/entrez.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/gbif.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/itol.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/rstats.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/rspr.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/paup.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/genbank.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/raxml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/seqgen.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/ape.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/coalescent.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/ncbi.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treesum.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treemanip.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/seqsim.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treesim.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/continuous.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/popgenstat.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/seqmodel.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/popgensim.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treecalc.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treesplit.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/reconcile.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> copying src/dendropy/mathlib/statistics.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> copying src/dendropy/mathlib/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> copying src/dendropy/mathlib/probability.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> copying src/dendropy/mathlib/mathfn.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/newickyielder.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/fastareader.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/multiphylipreader.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/newickwriter.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexusprocessing.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/newick.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexmlreader.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexusyielder.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/tokenizer.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexmlyielder.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexmlwriter.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/ioservice.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/newickreader.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/xmlprocessing.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexuswriter.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/phylipreader.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexusreader.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/fastawriter.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/phylipwriter.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/taxonmodel.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/basemodel.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/charstatemodel.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/treecollectionmodel.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/datasetmodel.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/charmatrixmodel.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/treemodel.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/coalescent.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/protractedspeciation.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/parsimony.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/treeshape.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/discrete.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/birthdeath.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/continuous.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/reconcile.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/multispeciescoalescent.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec
> copying src/dendropy/utility/libexec/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec
> running egg_info
> writing src/DendroPy.egg-info/PKG-INFO
> writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
> writing requirements to src/DendroPy.egg-info/requires.txt
> writing top-level names to src/DendroPy.egg-info/top_level.txt
> reading manifest file 'src/DendroPy.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> warning: no files found matching 'doc/Makefile'
> warning: no files found matching '*' under directory 'doc/source'
> warning: no previously-included files matching '.DS_Store' found anywhere in
> distribution
> warning: no previously-included files matching '*.pyc' found anywhere in
> distribution
> warning: no previously-included files matching '.gitignore' found anywhere in
> distribution
> warning: no previously-included files matching '.gitattributes' found
> anywhere in distribution
> warning: no previously-included files matching '.idea' found anywhere in
> distribution
> warning: no previously-included files matching '__pycache__' found anywhere
> in distribution
> adding license file 'LICENSE.rst'
> writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
> running build_scripts
> creating build
> creating build/scripts-3.11
> copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.11
> copying and adjusting applications/sumlabels/sumlabels.py ->
> build/scripts-3.11
> error: file '/<<PKGBUILDDIR>>/applications/dendropy-format/dendropy-format'
> does not exist
> E: pybuild pybuild:395: build: plugin distutils failed with: exit code=1:
> /usr/bin/python3 setup.py build
> dh_auto_build: error: pybuild --build -i python{version} -p 3.11 returned
> exit code 13
> make: *** [debian/rules:10: binary] Error 25
> dpkg-buildpackage: error: debian/rules binary subprocess returned exit status
> 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -b' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/16/python-dendropy_4.5.2-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: python-dendropy
Source-Version: 4.6.1-1
Done: Lance Lin <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-dendropy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Lance Lin <[email protected]> (supplier of updated python-dendropy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 27 Oct 2023 19:11:12 +0700
Source: python-dendropy
Architecture: source
Version: 4.6.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Lance Lin <[email protected]>
Closes: 1049497
Changes:
python-dendropy (4.6.1-1) unstable; urgency=medium
.
[ Lance Lin ]
* Team upload.
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
* Remove trailing whitespace in debian/rules (routine-update)
* d/rules: Copy file for successful consecutive builds (Closes: #1049497)
* d/copyright: Update year to 2023 for debian files
* d/patches: Add not-needed to Forwarded field for patch
* d/source/lintian-overrides: Ignore very long line length for data files
.
[ Andreas Tille ]
* Remove unneeded debian/source/include-binaries
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