Your message dated Sun, 17 Dec 2023 14:34:23 +0000
with message-id <[email protected]>
and subject line Bug#1048044: fixed in muscle3 3.8.1551-3
has caused the Debian Bug report #1048044,
regarding muscle3: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1048044: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1048044
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: muscle3
Version: 3.8.1551-2
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> ------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package muscle3
> dpkg-buildpackage: info: source version 3.8.1551-2
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Ãtienne Mollier
> <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean
> dh_auto_clean
> dh_clean
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building muscle3 using existing
> ./muscle3_3.8.1551.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to aligngivenpath.o: binary file
> contents changed
> dpkg-source: error: add aligngivenpath.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aligngivenpathsw.o: binary
> file contents changed
> dpkg-source: error: add aligngivenpathsw.o in debian/source/include-binaries
> if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aligntwomsas.o: binary file
> contents changed
> dpkg-source: error: add aligntwomsas.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aligntwoprofs.o: binary file
> contents changed
> dpkg-source: error: add aligntwoprofs.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aln.o: binary file contents
> changed
> dpkg-source: error: add aln.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to alpha.o: binary file contents
> changed
> dpkg-source: error: add alpha.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to anchors.o: binary file
> contents changed
> dpkg-source: error: add anchors.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to bittraceback.o: binary file
> contents changed
> dpkg-source: error: add bittraceback.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to blosum62.o: binary file
> contents changed
> dpkg-source: error: add blosum62.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to blosumla.o: binary file
> contents changed
> dpkg-source: error: add blosumla.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to clust.o: binary file contents
> changed
> dpkg-source: error: add clust.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to cluster.o: binary file
> contents changed
> dpkg-source: error: add cluster.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to clwwt.o: binary file contents
> changed
> dpkg-source: error: add clwwt.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to color.o: binary file contents
> changed
> dpkg-source: error: add color.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to cons.o: binary file contents
> changed
> dpkg-source: error: add cons.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to diaglist.o: binary file
> contents changed
> dpkg-source: error: add diaglist.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to diffobjscore.o: binary file
> contents changed
> dpkg-source: error: add diffobjscore.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to diffpaths.o: binary file
> contents changed
> dpkg-source: error: add diffpaths.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to difftrees.o: binary file
> contents changed
> dpkg-source: error: add difftrees.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to difftreese.o: binary file
> contents changed
> dpkg-source: error: add difftreese.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distcalc.o: binary file
> contents changed
> dpkg-source: error: add distcalc.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distfunc.o: binary file
> contents changed
> dpkg-source: error: add distfunc.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distpwkimura.o: binary file
> contents changed
> dpkg-source: error: add distpwkimura.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to domuscle.o: binary file
> contents changed
> dpkg-source: error: add domuscle.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to dosp.o: binary file contents
> changed
> dpkg-source: error: add dosp.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to dpreglist.o: binary file
> contents changed
> dpkg-source: error: add dpreglist.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to drawtree.o: binary file
> contents changed
> dpkg-source: error: add drawtree.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to edgelist.o: binary file
> contents changed
> dpkg-source: error: add edgelist.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to enumopts.o: binary file
> contents changed
> dpkg-source: error: add enumopts.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to enumtostr.o: binary file
> contents changed
> dpkg-source: error: add enumtostr.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to estring.o: binary file
> contents changed
> dpkg-source: error: add estring.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fasta.o: binary file contents
> changed
> dpkg-source: error: add fasta.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fasta2.o: binary file contents
> changed
> dpkg-source: error: add fasta2.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastclust.o: binary file
> contents changed
> dpkg-source: error: add fastclust.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdist.o: binary file
> contents changed
> dpkg-source: error: add fastdist.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistjones.o: binary file
> contents changed
> dpkg-source: error: add fastdistjones.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistkbit.o: binary file
> contents changed
> dpkg-source: error: add fastdistkbit.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistkmer.o: binary file
> contents changed
> dpkg-source: error: add fastdistkmer.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistmafft.o: binary file
> contents changed
> dpkg-source: error: add fastdistmafft.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistnuc.o: binary file
> contents changed
> dpkg-source: error: add fastdistnuc.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastscorepath2.o: binary file
> contents changed
> dpkg-source: error: add fastscorepath2.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to finddiags.o: binary file
> contents changed
> dpkg-source: error: add finddiags.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to finddiagsn.o: binary file
> contents changed
> dpkg-source: error: add finddiagsn.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalign.o: binary file
> contents changed
> dpkg-source: error: add glbalign.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalign352.o: binary file
> contents changed
> dpkg-source: error: add glbalign352.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbaligndiag.o: binary file
> contents changed
> dpkg-source: error: add glbaligndiag.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignle.o: binary file
> contents changed
> dpkg-source: error: add glbalignle.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignsimple.o: binary file
> contents changed
> dpkg-source: error: add glbalignsimple.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignsp.o: binary file
> contents changed
> dpkg-source: error: add glbalignsp.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignspn.o: binary file
> contents changed
> dpkg-source: error: add glbalignspn.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignss.o: binary file
> contents changed
> dpkg-source: error: add glbalignss.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalndimer.o: binary file
> contents changed
> dpkg-source: error: add glbalndimer.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globals.o: binary file
> contents changed
> dpkg-source: error: add globals.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globalslinux.o: binary file
> contents changed
> dpkg-source: error: add globalslinux.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globalsosx.o: binary file
> contents changed
> dpkg-source: error: add globalsosx.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globalsother.o: binary file
> contents changed
> dpkg-source: error: add globalsother.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globalswin32.o: binary file
> contents changed
> dpkg-source: error: add globalswin32.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to gonnet.o: binary file contents
> changed
> dpkg-source: error: add gonnet.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to henikoffweight.o: binary file
> contents changed
> dpkg-source: error: add henikoffweight.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to henikoffweightpb.o: binary
> file contents changed
> dpkg-source: error: add henikoffweightpb.o in debian/source/include-binaries
> if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to html.o: binary file contents
> changed
> dpkg-source: error: add html.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to hydro.o: binary file contents
> changed
> dpkg-source: error: add hydro.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to intmath.o: binary file
> contents changed
> dpkg-source: error: add intmath.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to local.o: binary file contents
> changed
> dpkg-source: error: add local.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to main.o: binary file contents
> changed
> dpkg-source: error: add main.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to makerootmsa.o: binary file
> contents changed
> dpkg-source: error: add makerootmsa.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to makerootmsab.o: binary file
> contents changed
> dpkg-source: error: add makerootmsab.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to maketree.o: binary file
> contents changed
> dpkg-source: error: add maketree.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to mhack.o: binary file contents
> changed
> dpkg-source: error: add mhack.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to mpam200.o: binary file
> contents changed
> dpkg-source: error: add mpam200.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to msa.o: binary file contents
> changed
> dpkg-source: error: add msa.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to msa2.o: binary file contents
> changed
> dpkg-source: error: add msa2.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to msadistkimura.o: binary file
> contents changed
> dpkg-source: error: add msadistkimura.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to msf.o: binary file contents
> changed
> dpkg-source: error: add msf.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to muscle: binary file contents
> changed
> dpkg-source: error: add muscle in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'muscle' will not be
> represented in diff
> dpkg-source: error: cannot represent change to muscle.o: binary file contents
> changed
> dpkg-source: error: add muscle.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to muscleout.o: binary file
> contents changed
> dpkg-source: error: add muscleout.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nucmx.o: binary file contents
> changed
> dpkg-source: error: add nucmx.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwdasimple.o: binary file
> contents changed
> dpkg-source: error: add nwdasimple.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwdasimple2.o: binary file
> contents changed
> dpkg-source: error: add nwdasimple2.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwdasmall.o: binary file
> contents changed
> dpkg-source: error: add nwdasmall.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwrec.o: binary file contents
> changed
> dpkg-source: error: add nwrec.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwsmall.o: binary file
> contents changed
> dpkg-source: error: add nwsmall.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to objscore.o: binary file
> contents changed
> dpkg-source: error: add objscore.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to objscore2.o: binary file
> contents changed
> dpkg-source: error: add objscore2.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to objscoreda.o: binary file
> contents changed
> dpkg-source: error: add objscoreda.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to onexception.o: binary file
> contents changed
> dpkg-source: error: add onexception.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to options.o: binary file
> contents changed
> dpkg-source: error: add options.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to outweights.o: binary file
> contents changed
> dpkg-source: error: add outweights.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to pam200mafft.o: binary file
> contents changed
> dpkg-source: error: add pam200mafft.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to params.o: binary file contents
> changed
> dpkg-source: error: add params.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phy.o: binary file contents
> changed
> dpkg-source: error: add phy.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phy2.o: binary file contents
> changed
> dpkg-source: error: add phy2.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phy3.o: binary file contents
> changed
> dpkg-source: error: add phy3.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phy4.o: binary file contents
> changed
> dpkg-source: error: add phy4.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phyfromclust.o: binary file
> contents changed
> dpkg-source: error: add phyfromclust.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phyfromfile.o: binary file
> contents changed
> dpkg-source: error: add phyfromfile.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to physeq.o: binary file contents
> changed
> dpkg-source: error: add physeq.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phytofile.o: binary file
> contents changed
> dpkg-source: error: add phytofile.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to posgap.o: binary file contents
> changed
> dpkg-source: error: add posgap.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to ppscore.o: binary file
> contents changed
> dpkg-source: error: add ppscore.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to profdb.o: binary file contents
> changed
> dpkg-source: error: add profdb.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to profile.o: binary file
> contents changed
> dpkg-source: error: add profile.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to profilefrommsa.o: binary file
> contents changed
> dpkg-source: error: add profilefrommsa.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to progalign.o: binary file
> contents changed
> dpkg-source: error: add progalign.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to progress.o: binary file
> contents changed
> dpkg-source: error: add progress.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to progressivealign.o: binary
> file contents changed
> dpkg-source: error: add progressivealign.o in debian/source/include-binaries
> if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to pwpath.o: binary file contents
> changed
> dpkg-source: error: add pwpath.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to readmx.o: binary file contents
> changed
> dpkg-source: error: add readmx.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to realigndiffs.o: binary file
> contents changed
> dpkg-source: error: add realigndiffs.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to realigndiffse.o: binary file
> contents changed
> dpkg-source: error: add realigndiffse.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refine.o: binary file contents
> changed
> dpkg-source: error: add refine.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinehoriz.o: binary file
> contents changed
> dpkg-source: error: add refinehoriz.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinesubfams.o: binary file
> contents changed
> dpkg-source: error: add refinesubfams.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinetree.o: binary file
> contents changed
> dpkg-source: error: add refinetree.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinetreee.o: binary file
> contents changed
> dpkg-source: error: add refinetreee.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinevert.o: binary file
> contents changed
> dpkg-source: error: add refinevert.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinew.o: binary file
> contents changed
> dpkg-source: error: add refinew.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to savebest.o: binary file
> contents changed
> dpkg-source: error: add savebest.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to scoredist.o: binary file
> contents changed
> dpkg-source: error: add scoredist.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to scoregaps.o: binary file
> contents changed
> dpkg-source: error: add scoregaps.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to scorehistory.o: binary file
> contents changed
> dpkg-source: error: add scorehistory.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to scorepp.o: binary file
> contents changed
> dpkg-source: error: add scorepp.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to seq.o: binary file contents
> changed
> dpkg-source: error: add seq.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to seqvect.o: binary file
> contents changed
> dpkg-source: error: add seqvect.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to setblosumweights.o: binary
> file contents changed
> dpkg-source: error: add setblosumweights.o in debian/source/include-binaries
> if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to setgscweights.o: binary file
> contents changed
> dpkg-source: error: add setgscweights.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to setnewhandler.o: binary file
> contents changed
> dpkg-source: error: add setnewhandler.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to spfast.o: binary file contents
> changed
> dpkg-source: error: add spfast.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to sptest.o: binary file contents
> changed
> dpkg-source: error: add sptest.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to stabilize.o: binary file
> contents changed
> dpkg-source: error: add stabilize.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to subfam.o: binary file contents
> changed
> dpkg-source: error: add subfam.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to subfams.o: binary file
> contents changed
> dpkg-source: error: add subfams.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to sw.o: binary file contents
> changed
> dpkg-source: error: add sw.o in debian/source/include-binaries if you want to
> store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to termgaps.o: binary file
> contents changed
> dpkg-source: error: add termgaps.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to textfile.o: binary file
> contents changed
> dpkg-source: error: add textfile.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to threewaywt.o: binary file
> contents changed
> dpkg-source: error: add threewaywt.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tomhydro.o: binary file
> contents changed
> dpkg-source: error: add tomhydro.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to traceback.o: binary file
> contents changed
> dpkg-source: error: add traceback.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tracebackopt.o: binary file
> contents changed
> dpkg-source: error: add tracebackopt.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tracebacksw.o: binary file
> contents changed
> dpkg-source: error: add tracebacksw.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to treefrommsa.o: binary file
> contents changed
> dpkg-source: error: add treefrommsa.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to typetostr.o: binary file
> contents changed
> dpkg-source: error: add typetostr.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to upgma2.o: binary file contents
> changed
> dpkg-source: error: add upgma2.o in debian/source/include-binaries if you
> want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to usage.o: binary file contents
> changed
> dpkg-source: error: add usage.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to validateids.o: binary file
> contents changed
> dpkg-source: error: add validateids.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to vtml2.o: binary file contents
> changed
> dpkg-source: error: add vtml2.o in debian/source/include-binaries if you want
> to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to writescorefile.o: binary file
> contents changed
> dpkg-source: error: add writescorefile.o in debian/source/include-binaries if
> you want to store the modified binary in the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 29
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/muscle3_3.8.1551-2_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: muscle3
Source-Version: 3.8.1551-3
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
muscle3, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated muscle3 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 17 Dec 2023 15:04:37 +0100
Source: muscle3
Architecture: source
Version: 3.8.1551-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1048044
Changes:
muscle3 (3.8.1551-3) unstable; urgency=medium
.
* Team upload.
* makefile.patch: mark forwarding not-needed.
* 01_Fix_FTBFS_Hurd.patch: mark forwarding missing.
* d/control: declare compliance to standards version 4.6.2.
* d/s/lintian-overrides: remove now unused override.
* d/clean: new: cleanup build artifacts. (Closes: #1048044)
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