Your message dated Thu, 04 Jan 2024 01:04:04 +0000
with message-id <[email protected]>
and subject line Bug#1042003: fixed in fenics-dolfinx 1:0.7.3-3
has caused the Debian Bug report #1042003,
regarding python3-dolfinx: test_vector_function.py fails with PETSc 3.19
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1042003: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042003
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python3-dolfinx
Version: 1:0.6.0-6
Severity: normal
Control: forwarded -1 https://github.com/FEniCS/dolfinx/issues/2736
The python unit test python/test/unit/fem/test_vector_function.py
fails after building dolfinx 0.6.0 against PETSc 3.19
$ pytest-3 -v python/test/unit/fem/test_vector_function.py
==================================================================================================================================
test session starts
===================================================================================================================================
platform linux -- Python 3.11.4, pytest-7.4.0, pluggy-1.2.0 -- /usr/bin/python3
cachedir: .pytest_cache
hypothesis profile 'default' ->
database=DirectoryBasedExampleDatabase('/projects/fenics/build/fenics-dolfinx/.hypothesis/examples')
rootdir: /projects/fenics/build/fenics-dolfinx/python
configfile: setup.cfg
plugins: xvfb-2.0.0, remotedata-0.4.0, asyncio-0.20.3, arraydiff-0.5.0,
hypothesis-6.82.0, filter-subpackage-0.1.2, flaky-3.7.0, mock-3.11.1, mpi-0.6,
astropy-header-0.2.2, cov-4.1.0, openfiles-0.5.0, astropy-0.10.0,
doctestplus-0.13.0
asyncio: mode=Mode.STRICT
collected 10 items
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[1-RT]
FAILED
[ 10%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[2-RT]
FAILED
[ 20%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[3-RT]
FAILED
[ 30%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[4-RT]
FAILED
[ 40%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[5-RT]
FAILED
[ 50%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[1-RT]
FAILED
[ 60%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[2-RT]
FAILED
[ 70%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[3-RT]
FAILED
[ 80%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[4-RT]
FAILED
[ 90%]
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[5-RT]
FAILED
[100%]
========================================================================================================================================
FAILURES
========================================================================================================================================
___________________________________________________________________________________________________________________________
test_div_conforming_triangle[1-RT]
___________________________________________________________________________________________________________________________
space_type = 'RT', order = 1
@pytest.mark.skip_in_parallel
@pytest.mark.parametrize('space_type', ["RT"])
@pytest.mark.parametrize('order', [1, 2, 3, 4, 5])
def test_div_conforming_triangle(space_type, order):
"""Checks that the vectors in div conforming spaces on a triangle are
correctly oriented"""
# Create simple triangle mesh
def perform_test(points, cells):
domain = ufl.Mesh(ufl.VectorElement("Lagrange", "triangle", 1))
mesh = create_mesh(MPI.COMM_WORLD, cells, points, domain)
V = FunctionSpace(mesh, (space_type, order))
f = Function(V)
output = []
for dof in range(len(f.vector[:])):
f.vector[:] = np.zeros(len(f.vector[:]))
f.vector[dof] = 1
points = np.array([[.5, .5, 0], [.5, .5, 0]])
cells = np.array([0, 1])
result = f.eval(points, cells)
normal = np.array([-1., 1.])
output.append(result.dot(normal))
return output
points = np.array([[0, 0], [1, 0], [1, 1], [0, 1]])
cells = np.array([[0, 1, 2], [2, 3, 0]])
> result = perform_test(points, cells)
python/test/unit/fem/test_vector_function.py:43:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
python/test/unit/fem/test_vector_function.py:31: in perform_test
f.vector[:] = np.zeros(len(f.vector[:]))
petsc4py/PETSc/Vec.pyx:107: in petsc4py.PETSc.Vec.__getitem__
???
petsc4py/PETSc/petscvec.pxi:436: in petsc4py.PETSc.vec_getitem
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E petsc4py.PETSc.Error: error code 73
E [0] VecGetValues() at ./src/vec/vec/interface/rvector.c:924
E [0] Object is in wrong state
E [0] Not for unassembled vector, did you call
VecAssemblyBegin()/VecAssemblyEnd()?
petsc4py/PETSc/petscvec.pxi:388: Error
...etc
================================================================================================================================
short test summary info
=================================================================================================================================
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[1-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[2-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[3-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[4-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_triangle[5-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[1-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[2-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[3-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[4-RT]
- petsc4py.PETSc.Error: error code 73
FAILED
python/test/unit/fem/test_vector_function.py::test_div_conforming_tetrahedron[5-RT]
- petsc4py.PETSc.Error: error code 73
===================================================================================================================================
10 failed in 1.91s
===================================================================================================================================
--- End Message ---
--- Begin Message ---
Source: fenics-dolfinx
Source-Version: 1:0.7.3-3
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
fenics-dolfinx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated fenics-dolfinx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 04 Jan 2024 01:51:08 +0100
Source: fenics-dolfinx
Architecture: source
Version: 1:0.7.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 1042003
Changes:
fenics-dolfinx (1:0.7.3-3) unstable; urgency=medium
.
* add debian patch test_timing_precision.patch to allow for more
uncertainty in timing resolution. Degradation of resolution might
have been introduced by boost 1.83. See upstream Issue #2946.
* dolfinx 0.7 supports PETSc 3.19. Closes: #1042003.
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