Your message dated Sun, 14 Jan 2024 13:49:10 +0000
with message-id <[email protected]>
and subject line Bug#1043996: fixed in biosquid 1.9g+cvs20050121-13
has caused the Debian Bug report #1043996,
regarding biosquid: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1043996: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1043996
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: biosquid
Version: 1.9g+cvs20050121-12
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> ----------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package biosquid
> dpkg-buildpackage: info: source version 1.9g+cvs20050121-12
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean
> rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log
> debian/libsquid1.debhelper.log
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_clean
> make -j8 distclean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> test -z "libsquid.la" || rm -f libsquid.la
> rm -rf .libs _libs
> rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch
> shuffle sindex sreformat translate weight
> rm -f *.o
> rm -f *.lo
> rm -f *.tab.c
> rm -f ./so_locations
> test -z "Testsuite/Makefile squid.h libsquid.pc" || rm -f Testsuite/Makefile
> squid.h libsquid.pc
> rm -f squidconf.h stamp-h1
> test . = "." || test -z "" || rm -f
> rm -f libtool config.lt
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> rm -f cscope.out cscope.in.out cscope.po.out cscope.files
> rm -f config.status config.cache config.log configure.lineno
> config.status.lineno
> rm -f ./.deps/afetch_main.Po
> rm -f ./.deps/aligneval.Po
> rm -f ./.deps/alistat_main.Po
> rm -f ./.deps/cluster.Po
> rm -f ./.deps/compalign_main.Po
> rm -f ./.deps/compstruct_main.Po
> rm -f ./.deps/eps.Po
> rm -f ./.deps/iupac.Po
> rm -f ./.deps/libsquid_la-a2m.Plo
> rm -f ./.deps/libsquid_la-aligneval.Plo
> rm -f ./.deps/libsquid_la-alignio.Plo
> rm -f ./.deps/libsquid_la-clustal.Plo
> rm -f ./.deps/libsquid_la-cluster.Plo
> rm -f ./.deps/libsquid_la-dayhoff.Plo
> rm -f ./.deps/libsquid_la-dirichlet.Plo
> rm -f ./.deps/libsquid_la-eps.Plo
> rm -f ./.deps/libsquid_la-file.Plo
> rm -f ./.deps/libsquid_la-getopt.Plo
> rm -f ./.deps/libsquid_la-gki.Plo
> rm -f ./.deps/libsquid_la-hsregex.Plo
> rm -f ./.deps/libsquid_la-iupac.Plo
> rm -f ./.deps/libsquid_la-msa.Plo
> rm -f ./.deps/libsquid_la-msf.Plo
> rm -f ./.deps/libsquid_la-phylip.Plo
> rm -f ./.deps/libsquid_la-revcomp.Plo
> rm -f ./.deps/libsquid_la-rk.Plo
> rm -f ./.deps/libsquid_la-selex.Plo
> rm -f ./.deps/libsquid_la-seqencode.Plo
> rm -f ./.deps/libsquid_la-shuffle.Plo
> rm -f ./.deps/libsquid_la-sqerror.Plo
> rm -f ./.deps/libsquid_la-sqio.Plo
> rm -f ./.deps/libsquid_la-squidcore.Plo
> rm -f ./.deps/libsquid_la-sre_ctype.Plo
> rm -f ./.deps/libsquid_la-sre_math.Plo
> rm -f ./.deps/libsquid_la-sre_random.Plo
> rm -f ./.deps/libsquid_la-sre_stack.Plo
> rm -f ./.deps/libsquid_la-sre_string.Plo
> rm -f ./.deps/libsquid_la-ssi.Plo
> rm -f ./.deps/libsquid_la-stockholm.Plo
> rm -f ./.deps/libsquid_la-stopwatch.Plo
> rm -f ./.deps/libsquid_la-translate.Plo
> rm -f ./.deps/libsquid_la-types.Plo
> rm -f ./.deps/libsquid_la-vectorops.Plo
> rm -f ./.deps/libsquid_la-weight.Plo
> rm -f ./.deps/libsquid_la-wuss.Plo
> rm -f ./.deps/revcomp.Po
> rm -f ./.deps/revcomp_main.Po
> rm -f ./.deps/seqsplit_main.Po
> rm -f ./.deps/seqstat_main.Po
> rm -f ./.deps/sfetch_main.Po
> rm -f ./.deps/shuffle.Po
> rm -f ./.deps/shuffle_main.Po
> rm -f ./.deps/sindex_main.Po
> rm -f ./.deps/sre_math.Po
> rm -f ./.deps/sre_stack.Po
> rm -f ./.deps/sreformat_main.Po
> rm -f ./.deps/translate.Po
> rm -f ./.deps/translate_main.Po
> rm -f ./.deps/weight.Po
> rm -f ./.deps/weight_main.Po
> rm -f ./.deps/wuss.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> rm -f configure
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean
> rm -f -- ./install-sh ./squidconf.h.in\~ ./aclocal.m4 ./config.guess
> ./autom4te.cache/requests ./autom4te.cache/traces.2 ./autom4te.cache/output.2
> ./autom4te.cache/output.1 ./autom4te.cache/traces.1 ./autom4te.cache/output.0
> ./autom4te.cache/traces.0 ./Makefile.in ./compile ./ltmain.sh ./configure
> ./depcomp ./squidconf.h.in ./missing
> rm -f debian/autoreconf.before debian/autoreconf.after
> dh_clean
> rm -f debian/debhelper-build-stamp
> cp -an --reflink=auto
> debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153
>
> debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp
> mv
> debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp
> config.sub
> rm -f debian/.debhelper/bucket/index
> rm -rf debian/.debhelper/
> rm -f -- debian/biosquid.substvars debian/libsquid1.substvars
> debian/libsquid-dev.substvars debian/files
> rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1/
> debian/libsquid-dev/
> find . \( \( \
> \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path
> .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o
> -type f -a \
> \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
> -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
> -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
> -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
> \) -exec rm -f {} + \) -o \
> \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \)
> \)
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building biosquid using existing
> ./biosquid_1.9g+cvs20050121.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to libsquid.a:
> dpkg-source: error: new version is symlink to .libs/libsquid.a
> dpkg-source: error: old version is nonexistent
> dpkg-source: warning: ignoring deletion of file install-sh, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file Makefile.in, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file squidconf.h.in, use
> --include-removal to override
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 255
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/biosquid_1.9g+cvs20050121-12_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: biosquid
Source-Version: 1.9g+cvs20050121-13
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
biosquid, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated biosquid package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 14 Jan 2024 14:29:59 +0100
Source: biosquid
Architecture: source
Version: 1.9g+cvs20050121-13
Distribution: unstable
Urgency: medium
Maintainer: Debian-Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1043996 1049808
Changes:
biosquid (1.9g+cvs20050121-13) unstable; urgency=medium
.
* Fix clean target
Closes: #1049808, #1043996
* Standards-Version: 4.6.2 (routine-update)
* Apply multi-arch hints.
+ libsquid1: Add Multi-Arch: same.
.
* watch file standard 4 (routine-update)
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--- End Message ---
