Your message dated Sun, 28 Jan 2024 19:20:05 +0000
with message-id <[email protected]>
and subject line Bug#1061639: fixed in gromacs 2023.4-2
has caused the Debian Bug report #1061639,
regarding FTBFS on riscv64: tries to uses rdcycle, privileged since kernel 6.6
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1061639: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1061639
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: gromacs
Version: 2023.3-1
Severity: important
Tags: ftbfs patch upstream
User: [email protected]
Usertags: riscv64
X-Debbugs-Cc: [email protected]
Dear maintainer,
Since the build daemons have been upgraded to kernel 6.6, gromacs FTBFS
with SIGILL in the testsuite:
| 69% tests passed, 26 tests failed out of 83
|
| Label Time Summary:
| GTest = 156.25 sec*proc (81 tests)
| IntegrationTest = 44.87 sec*proc (25 tests)
| MpiTest = 21.70 sec*proc (19 tests)
| QuickGpuTest = 25.14 sec*proc (17 tests)
| SlowGpuTest = 26.10 sec*proc (14 tests)
| SlowTest = 99.77 sec*proc (13 tests)
| UnitTest = 11.62 sec*proc (43 tests)
|
| Total Test time (real) = 156.87 sec
|
| The following tests FAILED:
| 1 - GmxapiExternalInterfaceTests (ILLEGAL)
| 4 - NbLibSamplesTestArgon (ILLEGAL)
| 5 - NbLibSamplesTestMethaneWater (ILLEGAL)
| 8 - NbLibTprTests (ILLEGAL)
| 9 - NbLibIntegrationTests (ILLEGAL)
| 42 - GmxTimingTests (ILLEGAL)
| 60 - MdrunOutputTests (ILLEGAL)
| 61 - MdrunModulesTests (ILLEGAL)
| 62 - MdrunIOTests (ILLEGAL)
| 63 - MdrunTestsOneRank (ILLEGAL)
| 64 - MdrunTestsTwoRanks (ILLEGAL)
| 65 - MdrunSingleRankAlgorithmsTests (ILLEGAL)
| 66 - MdrunNonIntegratorTests (ILLEGAL)
| 67 - MdrunTpiTests (ILLEGAL)
| 68 - MdrunMpiTests (ILLEGAL)
| 72 - MdrunMpi1RankPmeTests (ILLEGAL)
| 73 - MdrunMpi2RankPmeTests (ILLEGAL)
| 74 - MdrunCoordinationBasicTests1Rank (ILLEGAL)
| 75 - MdrunCoordinationBasicTests2Ranks (ILLEGAL)
| 76 - MdrunCoordinationCouplingTests1Rank (ILLEGAL)
| 77 - MdrunCoordinationCouplingTests2Ranks (ILLEGAL)
| 78 - MdrunCoordinationConstraintsTests1Rank (ILLEGAL)
| 79 - MdrunCoordinationConstraintsTests2Ranks (ILLEGAL)
| 80 - MdrunFEPTests (ILLEGAL)
| 81 - MdrunPullTests (ILLEGAL)
| 83 - MdrunVirtualSiteTests (ILLEGAL)
| Errors while running CTest
| make: *** [debian/rules:113: build-basic] Error 8
| dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit
status 2
A full build log is available here:
https://buildd.debian.org/status/fetch.php?pkg=gromacs&arch=riscv64&ver=2023.3-1%2Bb1&stamp=1706327375&raw=0
This happens because the rdcycle instruction has been changed to a
privileged instruction starting with this kernel version.
A patch to fix the issue has been submitted upstream [1]. Would it be
possible to include it in the next upload?
Thanks
Aurelien
[1] https://gitlab.com/gromacs/gromacs/-/merge_requests/4040
--- End Message ---
--- Begin Message ---
Source: gromacs
Source-Version: 2023.4-2
Done: Nicholas Breen <[email protected]>
We believe that the bug you reported is fixed in the latest version of
gromacs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nicholas Breen <[email protected]> (supplier of updated gromacs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 28 Jan 2024 10:58:51 -0800
Source: gromacs
Architecture: source
Version: 2023.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Nicholas Breen <[email protected]>
Closes: 1061639
Changes:
gromacs (2023.4-2) unstable; urgency=medium
.
* patches/riscv-rdtime.patch: use RDTIME instead of RDCYCLE instruction on
RISC-V, avoiding FTBFS with kernel >= 6.6. Thanks to Aurelien Jarno for
the report and patch. (Closes: #1061639)
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