Your message dated Tue, 12 Mar 2024 22:53:37 +0000
with message-id <[email protected]>
and subject line Bug#1065974: fixed in ghmm 0.9~rc3-6
has caused the Debian Bug report #1065974,
regarding ghmm: FTBFS on arm{el,hf}: mcmc.c:144:3: error: implicit declaration
of function ‘init_priors’ [-Werror=implicit-function-declaration]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1065974: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1065974
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ghmm
Version: 0.9~rc3-5.1
Severity: serious
Tags: ftbfs
X-Debbugs-Cc: [email protected]
https://buildd.debian.org/status/fetch.php?pkg=ghmm&arch=armhf&ver=0.9%7Erc3-5.1&stamp=1709147715&raw=0
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -I/usr/include/arm-linux-gnueabihf
-I/usr/include/libxml2 -Wl,-z,relro -Wl,-z,now -o libxml-test libxml-test.o
../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -llapacke -lxml2
mcmc.c: In function ‘main’:
mcmc.c:144:3: error: implicit declaration of function ‘init_priors’
[-Werror=implicit-function-declaration]
144 | init_priors(mo, &pA, &pB, &pPi);
| ^~~~~~~~~~~
mcmc.c:146:15: error: implicit declaration of function ‘ghmm_dmodel_cfbgibbs’;
did you mean ‘ghmm_dmodel_logp’? [-Werror=implicit-function-declaration]
146 | int * Q = ghmm_dmodel_cfbgibbs(mo, my_output,
| ^~~~~~~~~~~~~~~~~~~~
| ghmm_dmodel_logp
mcmc.c:146:15: warning: initialization of ‘int *’ from ‘int’ makes pointer from
integer without a cast [-Wint-conversion]
mcmc.c:148:108: warning: passing argument 4 of ‘ghmm_dmodel_viterbi_logp’ makes
pointer from integer without a cast [-Wint-conversion]
148 | printf("viterbi prob mcmc%f \n", ghmm_dmodel_viterbi_logp(mo,
my_output->seq[0], my_output->seq_len[0], Q[0]));
|
~^~~
|
|
|
int
In file included from mcmc.c:13:
../ghmm/viterbi.h:75:76: note: expected ‘int *’ but argument is of type ‘int’
75 | double ghmm_dmodel_viterbi_logp (ghmm_dmodel * mo, int *o, int len,
int *state_seq);
|
~~~~~^~~~~~~~~
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -I/usr/include/arm-linux-gnueabihf
-I/usr/include/libxml2 -Wl,-z,relro -Wl,-z,now -o chmm chmm.o
../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -llapacke -lxml2
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -I/usr/include/arm-linux-gnueabihf
-I/usr/include/libxml2 -Wl,-z,relro -Wl,-z,now -o chmm_test chmm_test.o
../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -llapacke -lxml2
cc1: some warnings being treated as errors
make[5]: *** [Makefile:823: mcmc.o] Error 1
Cheers
--
Sebastian Ramacher
--- End Message ---
--- Begin Message ---
Source: ghmm
Source-Version: 0.9~rc3-6
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ghmm, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated ghmm package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 12 Mar 2024 23:02:56 +0100
Source: ghmm
Architecture: source
Version: 0.9~rc3-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1065974
Changes:
ghmm (0.9~rc3-6) unstable; urgency=medium
.
* Team upload.
* fix-test-mcmc.patch: new: fix missing imports. (Closes: #1065974)
* python3.12.patch: new: fix remaining failures.
There were a couple of occurrences of calls to obsolet APIs causing
build failures.
* d/control: move to pkgconf.
* d/s/lintian-overrides: new: hide new error.
The lintian error looks to be a side effect of necessary changes for
the 64-bit time_t transition.
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Files:
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