Your message dated Thu, 25 Apr 2024 10:54:32 +0000
with message-id <e1rzwkk-001y1w...@fasolo.debian.org>
and subject line Bug#1069030: fixed in subread 2.0.6+dfsg-3
has caused the Debian Bug report #1069030,
regarding subread FTBFS on 32bit architectures:
-Werror=implicit-function-declaration
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1069030: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1069030
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: subread
Version: 2.0.6+dfsg-2
Severity: serious
Tags: ftbfs
subread fails to build from source on 32bit architectures: A
non-parallel build contains:
| i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -mtune=generic -msse3 -O3 -fsigned-char -Wall
-DMAKE_FOR_EXON -D MAKE_STANDALONE -D SUBREAD_VERSION=\""2.0.6"\"
-D_FILE_OFFSET_BITS=64 -fmessage-length=0 -ggdb -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o input-files.o input-files.c
| input-files.c: In function ‘f_subr_open’:
| input-files.c:54:24: error: implicit declaration of function ‘fopen64’; did
you mean ‘gzopen64’? [-Werror=implicit-function-declaration]
| 54 | return fopen64(fname, mode);
| | ^~~~~~~
| | gzopen64
Helmut
--- End Message ---
--- Begin Message ---
Source: subread
Source-Version: 2.0.6+dfsg-3
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
subread, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1069...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated subread package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 25 Apr 2024 13:38:39 +0300
Source: subread
Architecture: source
Version: 2.0.6+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1049300 1069030
Changes:
subread (2.0.6+dfsg-3) unstable; urgency=medium
.
* Team upload.
* d/control: simplify architecture specification by using the
provisions from the architecture-properties package.
* d/rules: preserve original mm39_RefSeq_exon.txt.gz to enable
building twice. Closes: #1049300
* d/control: update description of subread-data to include the gene
annotations for both the hh39 and mm39 genomes.
* d/patches/arch_specific_flags.patch: since -D_FILE_OFFSET_BITS=64 is
set, use fopen() even on 32-bit systems. Closes: #1069030
Thanks to blhc "E-pointer-trouble-at-implicit" for pointing this out.
* d/patches/cross.patch: deleted, as it was unused and incorporated
into arch_specific_flags.patch by Alexandre Mestiashvili.
* d/upstream/metadata: add publications, bug info, changelog, link to
user guide PDF.
* d/test/control: python3 is needed
Checksums-Sha1:
911efa347ed6f9aed9ecd38ad8e7ab0a952c1ace 2185 subread_2.0.6+dfsg-3.dsc
e405e199da83f5223e77fe028b32fa7d29b020f0 19600
subread_2.0.6+dfsg-3.debian.tar.xz
3ced8d5d27afa1d1fdca50afed811903de30c058 6772
subread_2.0.6+dfsg-3_source.buildinfo
Checksums-Sha256:
1d048843afd48e20a54f636e208a0c18cfd2d7547942b9f1cf90e99f3332e396 2185
subread_2.0.6+dfsg-3.dsc
2c0bcc064e2ceee01c53cdf91508f10931030580b33a4da9d4fcfc9ec8fd5519 19600
subread_2.0.6+dfsg-3.debian.tar.xz
899d9e5e94691a3dfd0b696569e8a08c21a49ffc44f1e797cb7c63f17a53320b 6772
subread_2.0.6+dfsg-3_source.buildinfo
Files:
e3a1b82606ea03e1a39f1be926eb30d9 2185 science optional subread_2.0.6+dfsg-3.dsc
f4a898483ea601dda3f2334cfcd7be98 19600 science optional
subread_2.0.6+dfsg-3.debian.tar.xz
95b3982fdabad195069509b7fc6a97e8 6772 science optional
subread_2.0.6+dfsg-3_source.buildinfo
-----BEGIN PGP SIGNATURE-----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=TnPf
-----END PGP SIGNATURE-----
pgpNhXgEiLDdR.pgp
Description: PGP signature
--- End Message ---
