Your message dated Thu, 04 Jul 2024 21:19:10 +0000
with message-id <[email protected]>
and subject line Bug#1074909: fixed in dialign 2.2.1-13
has caused the Debian Bug report #1074909,
regarding dialign: ftbfs with GCC-14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1074909: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1074909
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:dialign
Version: 2.2.1-12
Severity: important
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-14
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-14/g++-14, but succeeds to build with gcc-13/g++-13. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2024/07/01/dialign_2.2.1-12_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 14, either set CC=gcc-14 CXX=g++-14 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-14/porting_to.html
[...]
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package dialign
dpkg-buildpackage: info: source version 2.2.1-12
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <[email protected]>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find src/ -name '*.o' -delete
dh_clean src/dialign2-2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
## CFLAGS = -c -I-DCONS -O2
dh_auto_build --sourcedirectory=src
cd src && make -j8 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O
-I-DCONS dialign.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O
-I-DCONS functions.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O
-I-DCONS para.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O
-I-DCONS output.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O
-I-DCONS wgt.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O
-I-DCONS anchor.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O
-I-DCONS regex.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O
-I-DCONS input.c
functions.c:856:1: error: return type defaults to ‘int’ [-Wimplicit-int]
856 | wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt,
| ^~~~~~~~~~~~~~
functions.c:885:1: error: return type defaults to ‘int’ [-Wimplicit-int]
885 | plot_calc( int num , int e_len, float *w_count, float *pl,
| ^~~~~~~~~
regex.c:154:1: error: return type defaults to ‘int’ [-Wimplicit-int]
154 | seq_parse( char *mot_regex ) {
| ^~~~~~~~~
regex.c:154:1: warning: conflicting types for ‘seq_parse’
In file included from regex.c:18:
dialign.h:70:6: note: previous declaration of ‘seq_parse’ with type ‘void(char
*)’
70 | void seq_parse( char *mot_regex );
| ^~~~~~~~~
dialign.c:260:1: error: return type defaults to ‘int’ [-Wimplicit-int]
260 | main(int argc, char **argv)
| ^~~~
make[2]: *** [makefile:48: regex.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [makefile:36: functions.o] Error 1
make[2]: *** [makefile:34: dialign.o] Error 1
output.c:64:9: error: type defaults to ‘int’ in declaration of ‘plot_calc’
[-Wimplicit-int]
64 | extern plot_calc( int num , int e_len, float *w_count, float *pl,
| ^~~~~~~~~
output.c:66:9: error: type defaults to ‘int’ in declaration of ‘wgt_type_count’
[-Wimplicit-int]
66 | extern wgt_type_count( int num , int e_len, int *plus_cnt, int
*minus_cnt,
| ^~~~~~~~~~~~~~
make[2]: *** [makefile:44: output.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_auto_build: error: cd src && make -j8 "INSTALL=install --strip-program=true"
returned exit code 2
make[1]: *** [debian/rules:14: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:6: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: dialign
Source-Version: 2.2.1-13
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
dialign, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated dialign package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 04 Jul 2024 22:25:10 +0200
Source: dialign
Architecture: source
Version: 2.2.1-13
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1074909
Changes:
dialign (2.2.1-13) unstable; urgency=medium
.
* d/control: declare compliance to standards version 4.7.0.
* d/control: add myself to uploaders.
* gcc-14.patch: new: fix implicit types flagged by gcc-14. (Closes: #1074909)
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