Your message dated Fri, 05 Jul 2024 16:35:15 +0000
with message-id <[email protected]>
and subject line Bug#1075149: fixed in libbpp-phyl-omics 2.4.1-7
has caused the Debian Bug report #1075149,
regarding libbpp-phyl-omics: ftbfs with GCC-14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1075149: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1075149
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:libbpp-phyl-omics
Version: 2.4.1-6
Severity: important
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-14
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-14/g++-14, but succeeds to build with gcc-13/g++-13. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2024/07/01/libbpp-phyl-omics_2.4.1-6_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 14, either set CC=gcc-14 CXX=g++-14 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-14/porting_to.html
[...]
-
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1
- _ZNSt12_Vector_baseISt6vectorIdSaIdEESaIS2_EED1Ev@Base 2.4.1
- _ZNSt12_Vector_baseISt6vectorIdSaIdEESaIS2_EED2Ev@Base 2.4.1
+#MISSING: 2.4.1-6#
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
2.4.1
+#MISSING: 2.4.1-6#
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1
+#MISSING: 2.4.1-6# _ZNSt12_Vector_baseISt6vectorIdSaIdEESaIS2_EED1Ev@Base 2.4.1
+#MISSING: 2.4.1-6# _ZNSt12_Vector_baseISt6vectorIdSaIdEESaIS2_EED2Ev@Base 2.4.1
_ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base
2.4.1
_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base
2.4.1
_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE24_M_release_last_use_coldEv@Base
2.4.1
_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp10BppNumberIESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base
2.4.1
_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp8ClonableESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base
2.4.1
-
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
2.4.1
-
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
2.4.1-6~
+
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base
2.4.1-6
+
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base
2.4.1-6
+#MISSING: 2.4.1-6#
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
2.4.1
+#MISSING: 2.4.1-6#
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
2.4.1-6~
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1
-
_ZNSt6vectorIPKN3bpp4NodeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base
2.4.1
- _ZNSt6vectorIPKN3bpp4NodeESaIS3_EED1Ev@Base 2.4.1-6~
- _ZNSt6vectorIPKN3bpp4NodeESaIS3_EED2Ev@Base 2.4.1-6~
-
_ZNSt6vectorIPN3bpp17IterationListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
2.4.1
-
_ZNSt6vectorIPN3bpp4NodeESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
2.4.1
- _ZNSt6vectorIPN3bpp4NodeESaIS2_EED1Ev@Base 2.4.1-6~
- _ZNSt6vectorIPN3bpp4NodeESaIS2_EED2Ev@Base 2.4.1-6~
+ _ZNSt6vectorIPKN3bpp4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 2.4.1-6
+#MISSING: 2.4.1-6#
_ZNSt6vectorIPKN3bpp4NodeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base
2.4.1
+#MISSING: 2.4.1-6# _ZNSt6vectorIPKN3bpp4NodeESaIS3_EED1Ev@Base 2.4.1-6~
+#MISSING: 2.4.1-6# _ZNSt6vectorIPKN3bpp4NodeESaIS3_EED2Ev@Base 2.4.1-6~
+
_ZNSt6vectorIPN3bpp17IterationListenerESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base
2.4.1-6
+#MISSING: 2.4.1-6#
_ZNSt6vectorIPN3bpp17IterationListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
2.4.1
+ _ZNSt6vectorIPN3bpp4NodeESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.1-6
+#MISSING: 2.4.1-6#
_ZNSt6vectorIPN3bpp4NodeESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
2.4.1
+#MISSING: 2.4.1-6# _ZNSt6vectorIPN3bpp4NodeESaIS2_EED1Ev@Base 2.4.1-6~
+#MISSING: 2.4.1-6# _ZNSt6vectorIPN3bpp4NodeESaIS2_EED2Ev@Base 2.4.1-6~
_ZNSt6vectorIS_IdSaIdEESaIS1_EE17_M_default_appendEm@Base 2.4.1
_ZNSt6vectorIS_IdSaIdEESaIS1_EED1Ev@Base 2.4.1
_ZNSt6vectorIS_IdSaIdEESaIS1_EED2Ev@Base 2.4.1
_ZNSt6vectorIdSaIdEE17_M_default_appendEm@Base 2.4.1
- _ZNSt6vectorIdSaIdEED1Ev@Base 2.4.1-6~
- _ZNSt6vectorIdSaIdEED2Ev@Base 2.4.1-6~
+#MISSING: 2.4.1-6# _ZNSt6vectorIdSaIdEED1Ev@Base 2.4.1-6~
+#MISSING: 2.4.1-6# _ZNSt6vectorIdSaIdEED2Ev@Base 2.4.1-6~
_ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 2.4.1-6~
-
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base
2.4.1
- _ZNSt6vectorIiSaIiEED1Ev@Base 2.4.1-6~
- _ZNSt6vectorIiSaIiEED2Ev@Base 2.4.1-6~
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base
2.4.1
+#MISSING: 2.4.1-6#
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base
2.4.1
+#MISSING: 2.4.1-6# _ZNSt6vectorIiSaIiEED1Ev@Base 2.4.1-6~
+#MISSING: 2.4.1-6# _ZNSt6vectorIiSaIiEED2Ev@Base 2.4.1-6~
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 2.4.1-6
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 2.4.1-6
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 2.4.1-6
+#MISSING: 2.4.1-6#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
+#MISSING: 2.4.1-6#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base
2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base
2.4.1
+#MISSING: 2.4.1-6#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
+#MISSING: 2.4.1-6#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base
2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base
2.4.1
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEEPS7_ET0_T_SG_SF_@Base
2.4.1
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt6vectorIdSaIdEES2_IS4_SaIS4_EEEEPS4_ET0_T_SC_SB_@Base
2.4.1
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: libbpp-phyl-omics
Source-Version: 2.4.1-7
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libbpp-phyl-omics, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libbpp-phyl-omics package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 05 Jul 2024 18:10:01 +0200
Source: libbpp-phyl-omics
Architecture: source
Version: 2.4.1-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1075149
Changes:
libbpp-phyl-omics (2.4.1-7) unstable; urgency=medium
.
* Since every GCC version bump ends up in a bug caused by the need to
update symbols files we stop providing symbols for this library
Closes: 1075149
* lintian-override for no-symbols-control-file
* Standards-Version: 4.7.0 (routine-update)
Checksums-Sha1:
c8639f3d857a55e1c7a7b744fb44ab83b528356a 2273 libbpp-phyl-omics_2.4.1-7.dsc
f07d9e671ce92f33785fb09e6e422cb040048cb4 10632
libbpp-phyl-omics_2.4.1-7.debian.tar.xz
7ba7c9072336d0c348634a475ca63cb5231d9120 7924
libbpp-phyl-omics_2.4.1-7_amd64.buildinfo
Checksums-Sha256:
61865de053050e116dd2ae87cd3b41934bef937bf88eff31b579c56dfa80406d 2273
libbpp-phyl-omics_2.4.1-7.dsc
4d614b594eaf300295bc8917f4ef099983f308d8cf0cd94e1c7c5bf80e9cafcd 10632
libbpp-phyl-omics_2.4.1-7.debian.tar.xz
33990a2d6933ed953ba7d406c7b60b31c9980eb0b7ad519c73532ebb6f28f97f 7924
libbpp-phyl-omics_2.4.1-7_amd64.buildinfo
Files:
b903f0c5a393f30b486b0d1923cddba3 2273 science optional
libbpp-phyl-omics_2.4.1-7.dsc
729df38076498102b04f2079f46081db 10632 science optional
libbpp-phyl-omics_2.4.1-7.debian.tar.xz
977c611a7dfce9f05c2d15f15a583d28 7924 science optional
libbpp-phyl-omics_2.4.1-7_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=Ldz2
-----END PGP SIGNATURE-----
pgpSjKlE0BQaF.pgp
Description: PGP signature
--- End Message ---