Your message dated Sat, 13 Jul 2024 17:49:06 +0000
with message-id <[email protected]>
and subject line Bug#1074930: fixed in ecopcr 1.0.1+dfsg-5
has caused the Debian Bug report #1074930,
regarding ecopcr: ftbfs with GCC-14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1074930: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1074930
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:ecopcr
Version: 1.0.1+dfsg-4
Severity: important
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-14
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-14/g++-14, but succeeds to build with gcc-13/g++-13. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2024/07/01/ecopcr_1.0.1+dfsg-4_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 14, either set CC=gcc-14 CXX=g++-14 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-14/porting_to.html
[...]
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
debian/rules binary
dh binary --sourcedirectory=src --with python3
dh_update_autotools_config -O--sourcedirectory=src
dh_autoreconf -O--sourcedirectory=src
dh_auto_configure -O--sourcedirectory=src
dh_auto_build -O--sourcedirectory=src
cd src && make -j8 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoisundertaxon.d ecoisundertaxon.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofind.d ecofind.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecopcr.d ecopcr.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecopcr.o ecopcr.c
make -C libapat
make -C libecoPCR
make -C libthermo
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecofind.o ecofind.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecogrep.o ecogrep.c
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/libapat'
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o libstki.d libstki.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoisundertaxon.o ecoisundertaxon.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_search.d apat_search.c
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/libthermo'
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o nnparams.d nnparams.c
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/libecoPCR'
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o econame.d econame.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_parse.d apat_parse.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofilter.d ecofilter.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecotax.d ecotax.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o nnparams.o nnparams.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoseq.d ecoseq.c
ecogrep.c: In function ‘main’:
ecogrep.c:317:29: error: implicit declaration of function ‘isatty’
[-Wimplicit-function-declaration]
317 | if (isatty(fileno(stdin)) == 0)
| ^~~~~~
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apat_parse.o apat_parse.c
make[1]: *** [global.mk:11: ecogrep.o] Error 1
make[1]: *** Waiting for unfinished jobs....
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecorank.d ecorank.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoMalloc.d ecoMalloc.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoIOUtils.d ecoIOUtils.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoError.d ecoError.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apat_search.o apat_search.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecodna.d ecodna.c
gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoapat.d ecoapat.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o libstki.o libstki.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoapat.o ecoapat.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecodna.o ecodna.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoError.o ecoError.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoIOUtils.o ecoIOUtils.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoMalloc.o ecoMalloc.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecorank.o ecorank.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoseq.o ecoseq.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecotax.o ecotax.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecofilter.o ecofilter.c
gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3
-w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o econame.o econame.c
ar -cr libapat.a apat_parse.o apat_search.o libstki.o
ranlib libapat.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/libapat'
ar -cr libecoPCR.a ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o
ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o
ranlib libecoPCR.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/libecoPCR'
ar -cr libthermo.a nnparams.o
ranlib libthermo.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/libthermo'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_auto_build: error: cd src && make -j8 "INSTALL=install --strip-program=true"
returned exit code 2
make: *** [debian/rules:10: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: ecopcr
Source-Version: 1.0.1+dfsg-5
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ecopcr, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated ecopcr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 13 Jul 2024 19:16:09 +0200
Source: ecopcr
Architecture: source
Version: 1.0.1+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1074930
Changes:
ecopcr (1.0.1+dfsg-5) unstable; urgency=medium
.
* d/control: add myself to uploaders.
* d/control: declare compliance to standards version 4.7.0.
* gcc-14.patch: new: fix build failure with Gcc 14. (Closes: #1074930)
Checksums-Sha1:
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43e960687b37a945c7208f8eadf5c3d6df5fb581 16460
ecopcr_1.0.1+dfsg-5.debian.tar.xz
Checksums-Sha256:
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Files:
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ac7e4742304cbddfc8e959b5d2fe5bf1 16460 science optional
ecopcr_1.0.1+dfsg-5.debian.tar.xz
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