Your message dated Sun, 14 Jul 2024 18:55:30 +0000
with message-id <[email protected]>
and subject line Bug#1070843: fixed in r-bioc-s4vectors 0.42.1+dfsg-1~0exp
has caused the Debian Bug report #1070843,
regarding r-bioc-s4vectors: autopkgtest regression with r-base 4.4.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1070843: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1070843
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-bioc-s4vectors
Version: 0.40.2+dfsg-1
Severity: serious
X-Debbugs-Cc: Dirk Eddelbuettel <[email protected]>
User: [email protected]
Usertags: regression
Hi Maintainer
r-bioc-s4vectors' autopkgtest regresses when tested with r-base 4.4.0
[1]. I've copied what I hope is the relevant part of the log below.
Regards
Graham
[1] https://ci.debian.net/packages/r/r-bioc-s4vectors/testing/amd64/
125s > S4Vectors:::.test()
129s Timing stopped at: 0.009 0 0.009
129s Error in var(x) : is.atomic(y) is not TRUE
129s In addition: Warning messages:
129s 1: In combineUniqueCols(X, Y, Z, use.names = FALSE) :
129s different values in multiple instances of column 'dup', ignoring this
129s column in DFrame 2
129s 2: In combineUniqueCols(X, Y, Z) :
129s different values for shared rows in multiple instances of column 'dup',
129s ignoring this column in DFrame 2
129s 3: In combineUniqueCols(x, y2) :
129s different values for shared rows in multiple instances of column 'X',
129s ignoring this column in DFrame 2
130s Loading required package: GenomeInfoDb
132s
132s
132s RUNIT TEST PROTOCOL -- Thu May 9 22:12:10 2024
132s ***********************************************
132s Number of test functions: 74
132s Number of errors: 1
132s Number of failures: 0
132s
132s
132s 1 Test Suite :
132s S4Vectors RUnit Tests - 74 test functions, 1 error, 0 failures
132s ERROR in test_Rle_numerical: Error in var(x) : is.atomic(y) is not TRUE
132s
132s Test files with failing tests
132s
132s test_Rle-utils.R
132s test_Rle_numerical
132s
132s
132s Error in BiocGenerics:::testPackage("S4Vectors") :
132s unit tests failed for package S4Vectors
132s Calls: <Anonymous> -> <Anonymous>
132s Execution halted
--- End Message ---
--- Begin Message ---
Source: r-bioc-s4vectors
Source-Version: 0.42.1+dfsg-1~0exp
Done: Michael R. Crusoe <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-bioc-s4vectors, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated r-bioc-s4vectors
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 09 Jul 2024 17:21:49 +0200
Source: r-bioc-s4vectors
Architecture: source
Version: 0.42.1+dfsg-1~0exp
Distribution: experimental
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 1070843 1071349
Changes:
r-bioc-s4vectors (0.42.1+dfsg-1~0exp) experimental; urgency=medium
.
* Team upload
* New upstream version. Closes: #1070843, #1071349
* d/copyright: Exclude inst/doc/S4VectorsOverview.html
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