Your message dated Fri, 25 Oct 2024 14:50:59 +0000
with message-id <[email protected]>
and subject line Bug#1044536: fixed in fasta3 36.3.8i.14-Nov-2020-2
has caused the Debian Bug report #1044536,
regarding fasta3: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1044536: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1044536
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: fasta3
Version: 36.3.8i.14-Nov-2020-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> ---------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package fasta3
> dpkg-buildpackage: info: source version 36.3.8i.14-Nov-2020-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean --sourcedirectory src
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> if [ -d src ]; then cd src && /usr/bin/make -f "../make/Makefile.linux64"
> clean-up; fi
> make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
> rm -f *.o fasta36 ssearch36 lalign36 fasts36 fastx36 tfastx36 fasty36
> tfasty36 tfasts36 fastm36 tfastm36 fastf36 tfastf36 glsearch36 ggsearch36
> map_db; rm -rf ../bin/*
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean -O--sourcedirectory=src
> dh_clean -O--sourcedirectory=src
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building fasta3 using existing
> ./fasta3_36.3.8i.14-Nov-2020.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: ignoring deletion of file bin/README, use
> --include-removal to override
> dpkg-source: info: local changes detected, the modified files are:
> fasta3-36.3.8i.14-Nov-2020/test/results/test2G_m1.rfx
> fasta3-36.3.8i.14-Nov-2020/test/results/test2G_m1.rss
> fasta3-36.3.8i.14-Nov-2020/test/results/test2G_mc.lal
> fasta3-36.3.8i.14-Nov-2020/test/results/test2G_mc.lal_bl62
> fasta3-36.3.8i.14-Nov-2020/test/results/test2G_mc.lal_z3
> fasta3-36.3.8i.14-Nov-2020/test/results/test2G_mw.lal
> fasta3-36.3.8i.14-Nov-2020/test/results/test2G_mw.lal_bl62
> fasta3-36.3.8i.14-Nov-2020/test/results/test2G_mw.lal_z3
> fasta3-36.3.8i.14-Nov-2020/test/results/test_m1.rfx
> fasta3-36.3.8i.14-Nov-2020/test/results/test_m1.rss
> fasta3-36.3.8i.14-Nov-2020/test/results/test_mc.lal
> fasta3-36.3.8i.14-Nov-2020/test/results/test_mc.lal_bl62
> fasta3-36.3.8i.14-Nov-2020/test/results/test_mc.lal_z3
> fasta3-36.3.8i.14-Nov-2020/test/results/test_mw.lal
> fasta3-36.3.8i.14-Nov-2020/test/results/test_mw.lal_bl62
> fasta3-36.3.8i.14-Nov-2020/test/results/test_mw.lal_z3
> dpkg-source: error: aborting due to unexpected upstream changes, see
> /tmp/fasta3_36.3.8i.14-Nov-2020-1.diff.hR_Wgd
> dpkg-source: info: Hint: make sure the version in debian/changelog matches
> the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source
> --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/fasta3_36.3.8i.14-Nov-2020-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: fasta3
Source-Version: 36.3.8i.14-Nov-2020-2
Done: Michael R. Crusoe <[email protected]>
We believe that the bug you reported is fixed in the latest version of
fasta3, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated fasta3 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 25 Oct 2024 16:36:05 +0200
Source: fasta3
Architecture: source
Version: 36.3.8i.14-Nov-2020-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 1044536
Changes:
fasta3 (36.3.8i.14-Nov-2020-2) unstable; urgency=medium
.
* Team upload.
.
[ Michael R. Crusoe ]
* Force use of packaged SIMDe library
* Mark Debian-specific patches as not needing forwarding. Update my
email address
* Adjusted patch so that the autopkgtests run. Added bedtools as a
test dependency.
.
[ Andreas Tille ]
* Cleanup after testing
Closes: #1044536
* Add python3-mysql.connector, python3-requests to Suggests and Test-Depends
Checksums-Sha1:
de25ea26e57d63a8ef2048d9165b97eb5613b687 2252 fasta3_36.3.8i.14-Nov-2020-2.dsc
c8945e50c466df32e7fddceae71add914b43b65c 11020
fasta3_36.3.8i.14-Nov-2020-2.debian.tar.xz
3c2572d7139108b1ba0857667c4bd04dd2cf8866 7030
fasta3_36.3.8i.14-Nov-2020-2_source.buildinfo
Checksums-Sha256:
c7a9b44490799947dc17f9821447ccf525a9273fadf0b06295f1571b6609e9d2 2252
fasta3_36.3.8i.14-Nov-2020-2.dsc
c998fc806371b9211c6b6e30b06ffc3dca1803ec32aaa048dc24ec8cab3e0f93 11020
fasta3_36.3.8i.14-Nov-2020-2.debian.tar.xz
bfb0093bb28b1aef86710dc68acf6935da73f71fb8de902d4dd959face8f57fe 7030
fasta3_36.3.8i.14-Nov-2020-2_source.buildinfo
Files:
cdd61aa65ab563cce358495c91f94411 2252 science optional
fasta3_36.3.8i.14-Nov-2020-2.dsc
31bdf8c394efe4da6f70f15b67d360fa 11020 science optional
fasta3_36.3.8i.14-Nov-2020-2.debian.tar.xz
6d660f461bfce837f1429f9672be1dc1 7030 science optional
fasta3_36.3.8i.14-Nov-2020-2_source.buildinfo
-----BEGIN PGP SIGNATURE-----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=iSnV
-----END PGP SIGNATURE-----
pgpZv1lctgQLI.pgp
Description: PGP signature
--- End Message ---
