Your message dated Mon, 02 Dec 2024 18:17:16 +0000
with message-id <[email protected]>
and subject line Bug#1047005: fixed in roary 3.13.0+dfsg-2
has caused the Debian Bug report #1047005,
regarding roary: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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1047005: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1047005
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: roary
Version: 3.13.0+dfsg-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> -----------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package roary
> dpkg-buildpackage: info: source version 3.13.0+dfsg-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Sascha Steinbiss <[email protected]>
> dpkg-source --before-build .
> fakeroot debian/rules clean
> dh clean --with dist-zilla
> dh_dzil_clean
> [DZ] clean: removing .build
> dh_clean
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building roary using existing
> ./roary_3.13.0+dfsg.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: ignoring deletion of file
> bin/create_pan_genome_plots.R, use --include-removal to override
> dpkg-source: warning: executable mode 0755 of 'bin/create_pan_genome_plots'
> will not be represented in diff
> dpkg-source: info: local changes detected, the modified files are:
> roary-3.13.0+dfsg/bin/create_pan_genome_plots
> dpkg-source: error: aborting due to unexpected upstream changes, see
> /tmp/roary_3.13.0+dfsg-1.diff.BEAo8a
> dpkg-source: info: Hint: make sure the version in debian/changelog matches
> the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source
> --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/roary_3.13.0+dfsg-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: roary
Source-Version: 3.13.0+dfsg-2
Done: Ananthu C V <[email protected]>
We believe that the bug you reported is fixed in the latest version of
roary, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Ananthu C V <[email protected]> (supplier of updated roary package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 02 Dec 2024 23:00:41 +0530
Source: roary
Architecture: source
Version: 3.13.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Ananthu C V <[email protected]>
Closes: 1047005 1049576
Changes:
roary (3.13.0+dfsg-2) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* Use common naming scheme for autopkgtest scripts
* Provide autopkgtest as user example
* Standards-Version: 4.6.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Use secure URI in Homepage field.
* Drop unneeded lintian-overrides
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Add debug for "Cannot find the mcxdeblast executable, please ensure
its in your PATH"
* Fix autopkgtest
* The missing mcxdeblast issue is gone
.
[ Ananthu C V ]
* Move file to original place after build (Closes: #1047005, #1049576)
* Remove language suffix from installed scripts
* Bump standards version to 4.7.0 (no changes needed)
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