Bug#1082721: marked as done (khmer: FTBFS: failing tests)

Fri, 27 Dec 2024 19:09:24 -0800 

Your message dated Sat, 28 Dec 2024 03:06:21 +0000
with message-id <[email protected]>
and subject line Bug#1089546: Removed package(s) from unstable
has caused the Debian Bug report #1082721,
regarding khmer: FTBFS: failing tests
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)


-- 
1082721: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1082721
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message --- 
Package: src:khmer
Version: 3.0.0~a3+dfsg-8
Severity: serious
Tags: ftbfs

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
        pybuild --configure -i python{version} -p 3.12
I: pybuild base:311: python3.12 setup.py config
/<<PKGBUILDDIR>>/versioneer.py:421: SyntaxWarning: invalid escape sequence '\s'
  LONG_VERSION_PY['git'] = '''
*** NOTE: Found Cython, extension files will be transpiled if this is an 
install invocation.
/usr/lib/python3/dist-packages/setuptools/dist.py:452: 
SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        
********************************************************************************

[... snipped ...]

      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/align/gap_anchor.h:256:23: warning: 
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ 
is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from third-party/seqan/core/include/seqan/bam_io.h:107,
                 from third-party/seqan/core/include/seqan/store.h:41:
third-party/seqan/core/include/seqan/bam_io/bam_stream.h:180:10: warning: 
‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' 
instead [-Wdeprecated-declarations]
  180 |     std::auto_ptr<XamWriter_> _writer;
      |          ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
third-party/seqan/core/include/seqan/bam_io/bam_stream.h:182:10: warning: 
‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' 
instead [-Wdeprecated-declarations]
  182 |     std::auto_ptr<XamReader_> _reader;
      |          ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from third-party/seqan/core/include/seqan/store.h:59:
third-party/seqan/core/include/seqan/store/store_align.h:322:23: warning: 
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ 
is deprecated [-Wdeprecated-declarations]
  322 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:332:23: warning: 
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ 
is deprecated [-Wdeprecated-declarations]
  332 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:342:23: warning: 
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ 
is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:352:23: warning: 
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ 
is deprecated [-Wdeprecated-declarations]
  352 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:362:23: warning: 
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ 
is deprecated [-Wdeprecated-declarations]
  362 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:372:23: warning: 
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ 
is deprecated [-Wdeprecated-declarations]
  372 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION=3.0.0a3 -DSEQAN_HAS_BZIP2=1 
-DSEQAN_HAS_ZLIB=1 -UNO_UNIQUE_RC -Iinclude -I. -Ithird-party/seqan/core/include 
-Ithird-party/smhasher -Ithird-party/cqf -Ithird-party/rollinghash 
-I/usr/include/python3.12 -c src/oxli/storage.cc -o 
build/temp.linux-x86_64-cpython-312/src/oxli/storage.o -O3 -std=c++11 -fopenmp
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION=3.0.0a3 -DSEQAN_HAS_BZIP2=1 
-DSEQAN_HAS_ZLIB=1 -UNO_UNIQUE_RC -Iinclude -I. -Ithird-party/seqan/core/include 
-Ithird-party/smhasher -Ithird-party/cqf -Ithird-party/rollinghash 
-I/usr/include/python3.12 -c src/oxli/subset.cc -o 
build/temp.linux-x86_64-cpython-312/src/oxli/subset.o -O3 -std=c++11 -fopenmp
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION=3.0.0a3 -DSEQAN_HAS_BZIP2=1 
-DSEQAN_HAS_ZLIB=1 -UNO_UNIQUE_RC -Iinclude -I. -Ithird-party/seqan/core/include 
-Ithird-party/smhasher -Ithird-party/cqf -Ithird-party/rollinghash 
-I/usr/include/python3.12 -c src/oxli/traversal.cc -o 
build/temp.linux-x86_64-cpython-312/src/oxli/traversal.o -O3 -std=c++11 -fopenmp
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION=3.0.0a3 -DSEQAN_HAS_BZIP2=1 
-DSEQAN_HAS_ZLIB=1 -UNO_UNIQUE_RC -Iinclude -I. -Ithird-party/seqan/core/include 
-Ithird-party/smhasher -Ithird-party/cqf -Ithird-party/rollinghash 
-I/usr/include/python3.12 -c third-party/smhasher/MurmurHash3.cc -o 
build/temp.linux-x86_64-cpython-312/third-party/smhasher/MurmurHash3.o -O3 -std=c++11 
-fopenmp
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared 
-Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 
build/temp.linux-x86_64-cpython-312/src/khmer/_cpy_khmer.o 
build/temp.linux-x86_64-cpython-312/src/khmer/_cpy_readparsers.o 
build/temp.linux-x86_64-cpython-312/src/khmer/_cpy_utils.o build/temp.linux-x86_64-cpython-312/src/oxli/alphabets.o 
build/temp.linux-x86_64-cpython-312/src/oxli/assembler.o build/temp.linux-x86_64-cpython-312/src/oxli/hashgraph.o 
build/temp.linux-x86_64-cpython-312/src/oxli/hashtable.o build/temp.linux-x86_64-cpython-312/src/oxli/hllcounter.o 
build/temp.linux-x86_64-cpython-312/src/oxli/kmer_filters.o 
build/temp.linux-x86_64-cpython-312/src/oxli/kmer_hash.o build/temp.linux-x86_64-cpython-312/src/oxli/labelhash.o 
build/temp.linux-x86_64-cpython-312/src/oxli/read_aligner.o 
build/temp.linux-x86_64-cpython-312/src/oxli/read_parsers.o build/temp.linux-x86_64-cpython-312/src/oxli/storage.o 
build/temp.linux-x86_64-cpython-312/src/oxli/subset.o build/temp.linux-x86_64-cpython-312/src/oxli/traversal.o 
build/temp.linux-x86_64-cpython-312/third-party/smhasher/MurmurHash3.o third-party/cqf/gqf.o 
-L/usr/lib/x86_64-linux-gnu -lz -lbz2 -o 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_khmer.cpython-312-x86_64-linux-gnu.so 
-fopenmp
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/khmer
creating /<<PKGBUILDDIR>>/debian/khmer/usr
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/thread_utils.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_version.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/utils.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/khmer_logger.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
creating 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/parsing.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/legacy_partitioning.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hllcounter.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/parsing.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/traversal.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/legacy_partitioning.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/graphs.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashset.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/graphs.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/readaligner.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/utils.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/oxli_exception_convert.cc 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/readaligner.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/legacy_partitioning.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/labeling.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashset.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/assembly.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/assembly.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/graphs.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/utils.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/utils.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/parsing.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashing.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/graphs.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/assembly.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/labeling.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hllcounter.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashing.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashing.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashset.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/__init__.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashset.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/traversal.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/parsing.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashing.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/readaligner.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hllcounter.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/oxli_types.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/utils.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/legacy_partitioning.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/traversal.cpp -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/traversal.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/labeling.pxd -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/assembly.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/labeling.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/oxli_exception_convert.hh 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/readaligner.pyx -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hllcounter.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_khmer.cpython-312-x86_64-linux-gnu.so
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/kfile.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/khmer_args.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/__init__.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
creating 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_assembly.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_cython_parsing.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_lump.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_scripts.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_filter_abund.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/graph_features.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_banding.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_script_arguments.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_streaming_io.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_nodegraph.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/table_fixtures.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_tabletype.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_sequence_validation.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_oxli_functions.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_sandbox_scripts.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_read_parsers.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_script_output.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_cpython_hierarchy.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/__init__.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_countgraph.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_labelhash.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_threaded_sequence_processor.py
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_subset_graph.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_qfstorage.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_counttable.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_graph.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_hashset.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_normalize_by_median.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
creating 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-slash1.fq.2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/goodversion-k12.ht 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fa.gz 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-slash1.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/simple-genome.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/100-reads.fq.truncated.gz
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.paired2.fq
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/real-partition-tiny.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.malformat.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-paired.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-3.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.paired_bad
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/goodversion-k32.tagset
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/filter-test-A.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/badversion-k32.stoptags
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/goodversion-k12.ht.gz
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/truncated.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-paired.fq
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.fa.bz2
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/dn-test-all-paired-all-keep.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/badversion-k12.ct 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-reads.fq.bz2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.badright
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/real-partition-small.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fa.bz2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-error-reads.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fq.gz 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-filter-abund-Ns.fq
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/single-read.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/dn-test-none-paired.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.paired.fq
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-fastq-reads.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed-witherror.fa.pe
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/banding-reads.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/simple-genome-reads.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-reads.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fq -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-b.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fq.se 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.badleft
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/old-style-format-w-comments.fq
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/badversion-k12.ht 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/unclean-reads.fastq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.odd.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-empty.fa.bz2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/all-A.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-fastq-reads.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-X2.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken2.fq.1 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/normC20k20.ct -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-sweep-contigs.fp
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-short.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-31-c.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/filter-test-B.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/casava_18-pe.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/fakelump.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-overlap2.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-graph5.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-reads.fq.gz 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fq.1 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fa.part 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/seq-b.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.fa.gz
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fa.1 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-labels.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fa.2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fa.pe 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-empty.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.even.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fq.2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/branched-genome.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/bogus.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/README.rst 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken4.fq.1 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed-2.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/100-reads.fq.bz2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/empty-file.bz2 -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-sweep-reads.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-multi.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/100-reads.fq.gz 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/dn-test-some-paired-all-keep.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fa.se 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/readaligner-k12.json 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken2.fq.2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/multi-output.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/combine_parts_1.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-graph.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/badversion-k32.tagset
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-impaired.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-slash1.fq.1 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken3.fq.2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/empty-file.gz -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/empty-file 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.1 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/readaligner-default.json
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-overlap1.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-graph2.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-fastq-n-reads.fq
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/goodversion-k32.stoptags
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/100-reads.fq.truncated.bz2
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/valid-read-testing.fq
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/biglump-random-20-a.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fq.pe 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-large.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired_one.base.dif.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/seq-a.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/single-read.fq -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed-broken.fq
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fq.bz2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-transcript.fa 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken3.fq.1 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-output-partitions.fa
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/fakelump.fa.stoptags.txt
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fa -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.malformat.fq.2
 -> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken4.fq.2 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-sweep-reads.fq 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_counting_single.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_functions.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_hll.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/.gitignore -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_version.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_read_aligner.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_nibblestorage.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/khmer_tst_utils.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_memory.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_read_handling.py 
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/trimming.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/oxli/partition.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/oxli/build_graph.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/oxli/__init__.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/oxli/functions.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/thread_utils.py
 to thread_utils.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_version.py
 to _version.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/utils.py 
to utils.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/khmer_logger.py
 to khmer_logger.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli/__init__.py
 to __init__.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/kfile.py 
to kfile.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/khmer_args.py
 to khmer_args.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/__init__.py
 to __init__.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_assembly.py
 to test_assembly.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_cython_parsing.py
 to test_cython_parsing.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_lump.py
 to test_lump.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_scripts.py
 to test_scripts.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_filter_abund.py
 to test_filter_abund.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/graph_features.py
 to graph_features.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_banding.py
 to test_banding.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_script_arguments.py
 to test_script_arguments.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_streaming_io.py
 to test_streaming_io.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_nodegraph.py
 to test_nodegraph.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/table_fixtures.py
 to table_fixtures.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_tabletype.py
 to test_tabletype.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_sequence_validation.py
 to test_sequence_validation.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_oxli_functions.py
 to test_oxli_functions.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_sandbox_scripts.py
 to test_sandbox_scripts.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_read_parsers.py
 to test_read_parsers.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_script_output.py
 to test_script_output.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_cpython_hierarchy.py
 to test_cpython_hierarchy.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/__init__.py
 to __init__.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_countgraph.py
 to test_countgraph.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_labelhash.py
 to test_labelhash.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_threaded_sequence_processor.py
 to test_threaded_sequence_processor.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py
 to test_subset_graph.cpython-312.pyc
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:61: SyntaxWarning: 
"is" with 'int' literal. Did you mean "=="?
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:82: SyntaxWarning: 
"is" with 'int' literal. Did you mean "=="?
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:278: SyntaxWarning: 
"is" with 'int' literal. Did you mean "=="?
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:476: SyntaxWarning: 
"is" with 'int' literal. Did you mean "=="?
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:509: SyntaxWarning: 
"is" with 'int' literal. Did you mean "=="?
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_qfstorage.py
 to test_qfstorage.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_counttable.py
 to test_counttable.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_graph.py
 to test_graph.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_hashset.py
 to test_hashset.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_normalize_by_median.py
 to test_normalize_by_median.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_counting_single.py
 to test_counting_single.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_functions.py
 to test_functions.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_hll.py
 to test_hll.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_version.py
 to test_version.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_read_aligner.py
 to test_read_aligner.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_nibblestorage.py
 to test_nibblestorage.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/khmer_tst_utils.py
 to khmer_tst_utils.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_memory.py
 to test_memory.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_read_handling.py
 to test_read_handling.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/trimming.py
 to trimming.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli/partition.py
 to partition.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli/build_graph.py
 to build_graph.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli/__init__.py 
to __init__.cpython-312.pyc
byte-compiling 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli/functions.py
 to functions.cpython-312.pyc
running install_egg_info
Copying khmer.egg-info to 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer-3.0.0a3.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/abundance-dist.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/normalize-by-median.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/count-median.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/abundance-dist-single.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/filter-abund-single.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/extract-paired-reads.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/filter-abund.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/readstats.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/merge-partitions.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/partition-graph.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/extract-long-sequences.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/find-knots.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/sample-reads-randomly.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/fastq-to-fasta.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/load-into-counting.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/load-graph.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/do-partition.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/split-paired-reads.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/extract-partitions.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/unique-kmers.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/filter-stoptags.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/annotate-partitions.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/interleave-reads.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/trim-low-abund.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/make-initial-stoptags.py -> 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/abundance-dist.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/normalize-by-median.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/count-median.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/abundance-dist-single.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/filter-abund-single.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/extract-paired-reads.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/filter-abund.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/readstats.py 
to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/merge-partitions.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/partition-graph.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/extract-long-sequences.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/find-knots.py 
to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/sample-reads-randomly.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/fastq-to-fasta.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/load-into-counting.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/load-graph.py 
to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/do-partition.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/split-paired-reads.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/extract-partitions.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/unique-kmers.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/filter-stoptags.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/annotate-partitions.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/interleave-reads.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/trim-low-abund.py to 755
changing mode of 
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/make-initial-stoptags.py to 755
PYBUILD_SYSTEM=custom \
    PYBUILD_TEST_ARGS="cd {dir}; export PATH={destdir}/usr/lib/khmer/bin:$PATH 
; \
    cd {build_dir}; export PYTHONPATH=$(pwd); {interpreter} -m pytest \
    -m 'not known_failing and not jenkins and not huge and not noroot'\
    -q" dh_auto_test
        pybuild --test --test-pytest -i python{version} -p 3.12
I: pybuild base:311: cd '/<<PKGBUILDDIR>>'; export 
PATH='/<<PKGBUILDDIR>>/debian/khmer'/usr/lib/khmer/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
 ;     cd '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build'; export PYTHONPATH=/<<PKGBUILDDIR>>; 
python3.12 -m pytest     -m 'not known_failing and not jenkins and not huge and not noroot'    -q
============================= test session starts ==============================
platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build
configfile: pytest.ini
testpaths: tests
plugins: typeguard-4.3.0
collected 1492 items / 47 deselected / 1445 selected

tests/test_assembly.py ................................................. [  3%]
........................................................................ [  8%]
........................................................................ [ 13%]
........................................................................ [ 18%]
........................................................................ [ 23%]
....................                                                     [ 24%]
tests/test_banding.py ............                                       [ 25%]
tests/test_countgraph.py ................................Fatal Python error: 
Aborted

Current thread 0x00007f01a5290080 (most recent call first):
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/tests/test_countgraph.py", 
line 661 in test_save_load_occupied_small
  File "/usr/lib/python3/dist-packages/_pytest/python.py", line 159 in 
pytest_pyfunc_call
  File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in 
_multicall
  File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in 
_hookexec
  File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1627 in runtest
  File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 174 in 
pytest_runtest_call
  File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in 
_multicall
  File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in 
_hookexec
  File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 242 in <lambda>
  File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call
  File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241 in 
call_and_report
  File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132 in 
runtestprotocol
  File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113 in 
pytest_runtest_protocol
  File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in 
_multicall
  File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in 
_hookexec
  File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362 in 
pytest_runtestloop
  File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in 
_multicall
  File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in 
_hookexec
  File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337 in _main
  File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in 
wrap_session
  File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in 
pytest_cmdline_main
  File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in 
_multicall
  File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in 
_hookexec
  File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in 
main
  File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in 
console_main
  File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in <module>
  File "<frozen runpy>", line 88 in _run_code
  File "<frozen runpy>", line 198 in _run_module_as_main

Extension modules: khmer._khmer, khmer._oxli.hashing, khmer._oxli.utils, 
khmer._oxli.parsing, khmer._oxli.hashset, khmer._oxli.traversal, 
khmer._oxli.graphs, khmer._oxli.legacy_partitioning, khmer._oxli.labeling, 
khmer._oxli.assembly, khmer._oxli.readaligner, khmer._oxli.hllcounter (total: 
12)
Aborted
E: pybuild pybuild:389: test: plugin custom failed with: exit code=134: cd '/<<PKGBUILDDIR>>'; export 
PATH='/<<PKGBUILDDIR>>/debian/khmer'/usr/lib/khmer/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
 ;     cd '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build'; export PYTHONPATH=/<<PKGBUILDDIR>>; 
python3.12 -m pytest     -m 'not known_failing and not jenkins and not huge and not noroot'    -q
        rm -fr -- /tmp/dh-xdg-rundir-Kn_fBcP6
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.12 
returned exit code 13
make[1]: *** [debian/rules:29: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:16: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202409/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks.

--- End Message ---
--- Begin Message --- 
Version: 3.0.0~a3+dfsg-8+rm

Dear submitter,

as the package khmer has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/1089546

The version of this package that was in Debian prior to this removal
can still be found using https://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
[email protected].

Debian distribution maintenance software
pp.
Paul Richards Tagliamonte (the ftpmaster behind the curtain)

--- End Message ---

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