Your message dated Wed, 15 Jan 2025 12:17:13 +0000
with message-id <[email protected]>
and subject line Bug#1087373: fixed in seqan3 3.2.0+ds-6+deb12u1
has caused the Debian Bug report #1087373,
regarding seqan3: FTBFS: Some parallel tests fail on single-cpu systems
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1087373: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1087373
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:seqan3
Version: 3.3.0+ds-2
Severity: important
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, our package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure --builddirectory=build_unit --sourcedirectory=test/unit
--buildsystem=cmake+ninja -- -DCCACHE_PROGRAM:FILEPATH=
cd build_unit && DEB_PYTHON_INSTALL_LAYOUT=deb
PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON -GNinja -DCMAKE_VERBOSE_MAKEFILE=ON
-DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCCACHE_PROGRAM:FILEPATH= ../test/unit
-- The CXX compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
[... snipped ...]
8608/8610 Test #8608: utility/views/zip_test::zip_test.alignment_usage_1
.............................................................................................................................................................................................................................................................................................................................................................
Passed 0.00 sec
Start 8609: utility/views/zip_test::zip_test.alignment_usage_2
8609/8610 Test #8609: utility/views/zip_test::zip_test.alignment_usage_2
.............................................................................................................................................................................................................................................................................................................................................................
Passed 0.00 sec
Start 8610: utility/views/zip_test::zip_test.use_as_output_range
8610/8610 Test #8610: utility/views/zip_test::zip_test.use_as_output_range
...........................................................................................................................................................................................................................................................................................................................................................
Passed 0.00 sec
99% tests passed, 9 tests failed out of 8610
Total Test time (real) = 38.07 sec
The following tests FAILED:
5762 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.spmc_sum (Failed)
5763 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.mpsc_sum (Failed)
5764 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.mpmc_sum (Failed)
5767 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.spmc_dynamicsize
(Failed)
5768 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.spmc_fixedsize
(Failed)
5769 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.mpsc_dynamicsize
(Failed)
5770 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.mpsc_fixedsize
(Failed)
5771 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.mpmc_dynamicsize
(Failed)
5772 -
contrib/parallel/buffer_queue_parallel_test::buffer_queue.mpmc_fixedsize
(Failed)
Errors while running CTest
make[1]: *** [debian/rules:63: override_dh_auto_test] Error 8
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:29: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
I've put the full build log here:
https://people.debian.org/~sanvila/build-logs/202411/
After forwarding this upstream, they provided a fix:
https://github.com/seqan/seqan3/pull/3303/commits/54e011dd8e2190543f8bca2c0cba097d5dd5cb75
I plan to make a team upload with the above fix.
Note 1: I see there is a different version in experimental, but fortunately
it is in their own branch in salsa, so I guess it should not be a problem.
Note 2: Because they already fixed it in their repo, it is likely that the
patch will not be needed anymore after they release 3.4.0 final, but I wanted
to document this anyway because I plan to fix it in stable as well.
Thanks.
--- End Message ---
--- Begin Message ---
Source: seqan3
Source-Version: 3.2.0+ds-6+deb12u1
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
seqan3, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated seqan3 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 30 Dec 2024 18:20:00 +0100
Source: seqan3
Architecture: source
Version: 3.2.0+ds-6+deb12u1
Distribution: bookworm
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1087373
Changes:
seqan3 (3.2.0+ds-6+deb12u1) bookworm; urgency=medium
.
* Team upload.
* Fix parallel tests. Closes: #1087373.
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--- End Message ---
