Your message dated Thu, 10 Apr 2025 02:36:47 +0000
with message-id <[email protected]>
and subject line Bug#1087096: fixed in sra-sdk 3.2.1+dfsg-3
has caused the Debian Bug report #1087096,
regarding sra-sdk: Python SyntaxWarning
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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1087096: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1087096
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: sra-sdk
Version: 3.0.9+dfsg-7
User: [email protected]
Usertags: syntaxwarning
Hi Maintainer
The SyntaxWarning below were emitted when this package was tested with
pipuarts[1].
Regards
Graham
[1] https://piuparts.debian.org/sid/source/s/sra-sdk.html
Setting up python3-ngs (3.0.9+dfsg-7) ...
/usr/lib/python3/dist-packages/ngs/LibManager.py:123: SyntaxWarning:
invalid escape sequence '\.'
arr = re.split('\.\s*|\-\s*|\s+', version_str)
--- End Message ---
--- Begin Message ---
Source: sra-sdk
Source-Version: 3.2.1+dfsg-3
Done: Aaron M. Ucko <[email protected]>
We believe that the bug you reported is fixed in the latest version of
sra-sdk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <[email protected]> (supplier of updated sra-sdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 09 Apr 2025 21:31:32 -0400
Source: sra-sdk
Architecture: source
Version: 3.2.1+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Aaron M. Ucko <[email protected]>
Closes: 1084404 1087096 1099933
Changes:
sra-sdk (3.2.1+dfsg-3) unstable; urgency=medium
.
* Upload to unstable.
* debian/salsa-ci.yml: Disable use of experimental (build-)deps again.
.
sra-sdk (3.2.1+dfsg-2) experimental; urgency=medium
.
* debian/control: Build-depend on python3-setuptools.
* debian/patches/fix_arm64_build.patch: Correct parenthesis placement.
* debian/patches/setuptools.patch (new): Substitute setuptools for
distutils (retired) in ngs/ngs-python/setup.py.
* debian/rules:
- Set PIP_BREAK_SYSTEM_PACKAGES for upstream's test suite.
- Substitute pybuild for direct setup.py invocation and clean up after
it.
* .gitignore: Add .pc (belatedly) and .pybuild.
.
sra-sdk (3.2.1+dfsg-1) experimental; urgency=medium
.
[ Andreas Tille ]
* New upstream version 3.1.1.
* Fix Python3.12 string syntax
Closes: #1087096
* Do not fail if clean target debian/libngs-jni.links does not exist
.
[ Aaron M. Ucko ]
* New upstream version 3.2.1.
* debian/control:
- Tighten libncbi-vdb-dev build dependency as usual; add one on
python3-vdb (provided by ncbi-vdb-data for now, to be split off
post-Trixie.)
- Drop vestigial build dependency on libfuse-dev. (Closes: #1084404.)
* debian/copyright: Update GPL logistics (see #1080497) and bm and
spdlog paths.
* debian/patches: Update accordingly. Notably:
- label_online_tests.patch: Add a couple dozen additional tests.
- missing_include.patch: Drop, superfluous at this point.
- support_libre2-11.patch: Cover new additions to
fastq_defline_matcher.hpp.
- use_debian_packaged_re2.patch: Cover new test-sharq-reader.
* debian/rules:
- Stop generating and installing debian.kfg, taken over by
ncbi-vdb-data.
- Clean up additional build output.
* debian/salsa-ci.yml: Reenable use of experimental (build-)deps for now.
* debian/tests/control: Per Stefano Rivera (thanks!), declare a
dependency on ca-certificates and the need for Internet access.
(Closes: #1099933.)
* .gitignore: Add, belatedly.
* Standards-Version: 4.7.2 (routine-update)
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Files:
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