Your message dated Sat, 20 Sep 2025 10:04:51 +0000
with message-id <[email protected]>
and subject line Bug#1101839: fixed in python-nxtomomill 1.1.0-5
has caused the Debian Bug report #1101839,
regarding python3-tqdm: segmentation fault in destructor method
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1101839: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1101839
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python3-tqdm
Version: 4.67.1-3
Severity: important
Dear Maintainer,
I'm seeing reproducible autopkgtest failures (segmentation fault) on
python3-nxtomomill. I've started debugging that using the following lines in
debian/rules:
export PYBUILD_TEST_CUSTOM=1
export PYBUILD_TEST_ARGS={interpreter} -X faulthandler -m pytest -p
no:faulthandler -v -k "not test_fluo2nx_application_"
This allowed me to get the following stacktrace of the interpreter at the
moment of the segfault:
[...]
nxtomomill/utils/tests/test_utils.py::TestChangeImageKeyControl::testUpdateToFlat
PASSED [ 98%]
nxtomomill/utils/tests/test_utils.py::TestChangeImageKeyControl::testUpdateToInvalid
PASSED [ 98%]
nxtomomill/utils/tests/test_utils.py::TestChangeImageKeyControl::testUpdateToProjections
PASSED [ 99%]
nxtomomill/utils/tests/test_utils.py::TestAddDarkAndFlatFromADifferentFolderWithVDS::test
PASSED [100%]
=============================== warnings summary
===============================
../../../../usr/lib/python3/dist-
packages/tomoscan/framereducer/framereducerbase.py:4
/usr/lib/python3/dist-packages/tomoscan/framereducer/framereducerbase.py:4:
DeprecationWarning: numpy.core.numerictypes is deprecated and has been renamed
to numpy._core.numerictypes. The numpy._core namespace contains private NumPy
internals and its use is discouraged, as NumPy internals can change without
warning in any release. In practice, most real-world usage of numpy.core is to
access functionality in the public NumPy API. If that is the case, use the
public NumPy API. If not, you are using NumPy internals. If you would still
like to access an internal attribute, use numpy._core.numerictypes.generic.
from numpy.core.numerictypes import generic as numy_generic
nxtomomill/app/tests/test_edf2nx_app.py::test_edf2nx_application
/usr/lib/python3/dist-packages/tqdm/std.py:636: TqdmWarning: clamping frac to
range [0, 1]
full_bar = Bar(frac,
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================ 168 passed, 3 deselected, 2 warnings in 29.38s
================
Fatal Python error: Segmentation fault
Current thread 0x00007f2e7675d780 (most recent call first):
Garbage-collecting
File "/usr/lib/python3/dist-packages/tqdm/std.py", line 576 in format_meter
File "/usr/lib/python3/dist-packages/tqdm/std.py", line 1151 in __str__
File "/usr/lib/python3/dist-packages/tqdm/std.py", line 1495 in display
File "/usr/lib/python3/dist-packages/tqdm/std.py", line 1302 in close
File "/usr/lib/python3/dist-packages/tqdm/std.py", line 1148 in __del__
Segmentation fault
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=139: cd
/tmp/autopkgtest.4irIce/autopkgtest_tmp/build; {interpreter} -X faulthandler -m
pytest -p no:faulthandler -v -k "not test_fluo2nx_application_"
This seems to point at tqdm, so I'm reporting this to you :-) I'm marking this
bug as important since it breaks another unrelated package.
The segfault is quite reproducible in a cowbuilder chroot during autopkgtest
runs, but for some reason it doesn't seem to happen during the test phase of
the build.
Thanks,
Roland.
[Please disregard the "system information" below, I run reportbug on a
different workstation; the bug really is about unstable]
-- System Information:
Debian Release: 12.10
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-31-amd64 (SMP w/16 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages python3-tqdm depends on:
ii python3 3.11.2-1+b1
python3-tqdm recommends no packages.
python3-tqdm suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: python-nxtomomill
Source-Version: 1.1.0-5
Done: Roland Mas <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-nxtomomill, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Roland Mas <[email protected]> (supplier of updated python-nxtomomill package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 20 Sep 2025 11:43:49 +0200
Source: python-nxtomomill
Architecture: source
Version: 1.1.0-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Team <[email protected]>
Changed-By: Roland Mas <[email protected]>
Closes: 1101839
Changes:
python-nxtomomill (1.1.0-5) unstable; urgency=medium
.
[ Rebecca N. Palmer ]
* Re-enable autopkgtest and enable Salsa CI.
* Tests: avoid crash on exit (Closes: #1101839).
* Improve description spelling and grammar.
* Unbreak d/watch.
.
[ Roland Mas ]
* All the work for this release was done by Rebecca, thanks!
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