Your message dated Mon, 20 Oct 2025 09:21:24 +0000
with message-id <[email protected]>
and subject line Bug#1118427: fixed in python-symfc 1.5.4-2
has caused the Debian Bug report #1118427,
regarding python-symfc: FTBFS: FAILED
tests/basis_sets/test_basis_sets_O2.py::test_fc_basis_set_o2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1118427: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1118427
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:python-symfc
Version: 1.5.4-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202510/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-symfc, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build"
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc
* Building wheel...
No `packages` or `py_modules` configuration, performing automatic discovery.
`src-layout` detected -- analysing ./src
discovered packages -- ['symfc', 'symfc.utils', 'symfc.solvers',
'symfc.basis_sets', 'symfc.spg_reps', 'symfc.utils.rotation_dev']
discovered py_modules -- []
/usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82:
SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
!!
********************************************************************************
Please use a simple string containing a SPDX expression for
`project.license`. You can also use `project.license-files`. (Both options
available on setuptools>=77.0.0).
By 2026-Feb-18, you need to update your project and remove deprecated
calls
or your builds will no longer be supported.
See
https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license
for details.
********************************************************************************
!!
corresp(dist, value, root_dir)
running bdist_wheel
running build
running build_py
creating build/lib/symfc
copying src/symfc/__init__.py -> build/lib/symfc
copying src/symfc/version.py -> build/lib/symfc
copying src/symfc/api_symfc.py -> build/lib/symfc
creating build/lib/symfc/utils
copying src/symfc/utils/__init__.py -> build/lib/symfc/utils
copying src/symfc/utils/rotation_tools_O2.py -> build/lib/symfc/utils
copying src/symfc/utils/translation_tools_O4.py -> build/lib/symfc/utils
copying src/symfc/utils/translation_tools_O2.py -> build/lib/symfc/utils
copying src/symfc/utils/permutation_tools_O2.py -> build/lib/symfc/utils
copying src/symfc/utils/permutation_tools_O4.py -> build/lib/symfc/utils
copying src/symfc/utils/cutoff_tools.py -> build/lib/symfc/utils
copying src/symfc/utils/matrix.py -> build/lib/symfc/utils
copying src/symfc/utils/eig_tools.py -> build/lib/symfc/utils
copying src/symfc/utils/utils_O3.py -> build/lib/symfc/utils
copying src/symfc/utils/graph.py -> build/lib/symfc/utils
copying src/symfc/utils/translation_tools_O3.py -> build/lib/symfc/utils
copying src/symfc/utils/utils_O2.py -> build/lib/symfc/utils
copying src/symfc/utils/translation_tools_O1.py -> build/lib/symfc/utils
copying src/symfc/utils/solver_funcs.py -> build/lib/symfc/utils
copying src/symfc/utils/utils_O1.py -> build/lib/symfc/utils
copying src/symfc/utils/utils_O4.py -> build/lib/symfc/utils
copying src/symfc/utils/utils.py -> build/lib/symfc/utils
copying src/symfc/utils/permutation_tools_O3.py -> build/lib/symfc/utils
copying src/symfc/utils/permutation_tools.py -> build/lib/symfc/utils
creating build/lib/symfc/solvers
copying src/symfc/solvers/solver_O3O4.py -> build/lib/symfc/solvers
copying src/symfc/solvers/solver_O2O3O4.py -> build/lib/symfc/solvers
copying src/symfc/solvers/solver_O4.py -> build/lib/symfc/solvers
copying src/symfc/solvers/__init__.py -> build/lib/symfc/solvers
copying src/symfc/solvers/solver_O2O3.py -> build/lib/symfc/solvers
copying src/symfc/solvers/solver_O2.py -> build/lib/symfc/solvers
copying src/symfc/solvers/solver_O3.py -> build/lib/symfc/solvers
copying src/symfc/solvers/solver_base.py -> build/lib/symfc/solvers
creating build/lib/symfc/basis_sets
copying src/symfc/basis_sets/__init__.py -> build/lib/symfc/basis_sets
copying src/symfc/basis_sets/basis_sets_O3.py -> build/lib/symfc/basis_sets
copying src/symfc/basis_sets/basis_sets_O4.py -> build/lib/symfc/basis_sets
copying src/symfc/basis_sets/basis_sets_base.py -> build/lib/symfc/basis_sets
copying src/symfc/basis_sets/basis_sets_O2.py -> build/lib/symfc/basis_sets
copying src/symfc/basis_sets/basis_sets_O1.py -> build/lib/symfc/basis_sets
creating build/lib/symfc/spg_reps
copying src/symfc/spg_reps/spg_reps_O4.py -> build/lib/symfc/spg_reps
copying src/symfc/spg_reps/__init__.py -> build/lib/symfc/spg_reps
copying src/symfc/spg_reps/spg_reps_base.py -> build/lib/symfc/spg_reps
copying src/symfc/spg_reps/spg_reps_O3.py -> build/lib/symfc/spg_reps
copying src/symfc/spg_reps/spg_reps_O2.py -> build/lib/symfc/spg_reps
copying src/symfc/spg_reps/spg_reps_O1.py -> build/lib/symfc/spg_reps
creating build/lib/symfc/utils/rotation_dev
copying src/symfc/utils/rotation_dev/run_rotation_tools_O2.py ->
build/lib/symfc/utils/rotation_dev
copying src/symfc/utils/rotation_dev/__init__.py ->
build/lib/symfc/utils/rotation_dev
copying src/symfc/utils/rotation_dev/run_rotation_tools_O3.py ->
build/lib/symfc/utils/rotation_dev
copying src/symfc/utils/rotation_dev/run_test_O2.py ->
build/lib/symfc/utils/rotation_dev
running egg_info
creating src/symfc.egg-info
writing src/symfc.egg-info/PKG-INFO
writing dependency_links to src/symfc.egg-info/dependency_links.txt
writing requirements to src/symfc.egg-info/requires.txt
writing top-level names to src/symfc.egg-info/top_level.txt
writing manifest file 'src/symfc.egg-info/SOURCES.txt'
reading manifest file 'src/symfc.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'src/symfc.egg-info/SOURCES.txt'
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/symfc
copying build/lib/symfc/__init__.py -> build/bdist.linux-x86_64/wheel/./symfc
copying build/lib/symfc/version.py -> build/bdist.linux-x86_64/wheel/./symfc
creating build/bdist.linux-x86_64/wheel/symfc/utils
copying build/lib/symfc/utils/__init__.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/rotation_tools_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/translation_tools_O4.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/translation_tools_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
creating build/bdist.linux-x86_64/wheel/symfc/utils/rotation_dev
copying build/lib/symfc/utils/rotation_dev/run_rotation_tools_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils/rotation_dev
copying build/lib/symfc/utils/rotation_dev/__init__.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils/rotation_dev
copying build/lib/symfc/utils/rotation_dev/run_rotation_tools_O3.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils/rotation_dev
copying build/lib/symfc/utils/rotation_dev/run_test_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils/rotation_dev
copying build/lib/symfc/utils/permutation_tools_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/permutation_tools_O4.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/cutoff_tools.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/matrix.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/eig_tools.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/utils_O3.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/graph.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/translation_tools_O3.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/utils_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/translation_tools_O1.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/solver_funcs.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/utils_O1.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/utils_O4.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/utils.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/permutation_tools_O3.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
copying build/lib/symfc/utils/permutation_tools.py ->
build/bdist.linux-x86_64/wheel/./symfc/utils
creating build/bdist.linux-x86_64/wheel/symfc/solvers
copying build/lib/symfc/solvers/solver_O3O4.py ->
build/bdist.linux-x86_64/wheel/./symfc/solvers
copying build/lib/symfc/solvers/solver_O2O3O4.py ->
build/bdist.linux-x86_64/wheel/./symfc/solvers
copying build/lib/symfc/solvers/solver_O4.py ->
build/bdist.linux-x86_64/wheel/./symfc/solvers
copying build/lib/symfc/solvers/__init__.py ->
build/bdist.linux-x86_64/wheel/./symfc/solvers
copying build/lib/symfc/solvers/solver_O2O3.py ->
build/bdist.linux-x86_64/wheel/./symfc/solvers
copying build/lib/symfc/solvers/solver_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/solvers
copying build/lib/symfc/solvers/solver_O3.py ->
build/bdist.linux-x86_64/wheel/./symfc/solvers
copying build/lib/symfc/solvers/solver_base.py ->
build/bdist.linux-x86_64/wheel/./symfc/solvers
creating build/bdist.linux-x86_64/wheel/symfc/basis_sets
copying build/lib/symfc/basis_sets/__init__.py ->
build/bdist.linux-x86_64/wheel/./symfc/basis_sets
copying build/lib/symfc/basis_sets/basis_sets_O3.py ->
build/bdist.linux-x86_64/wheel/./symfc/basis_sets
copying build/lib/symfc/basis_sets/basis_sets_O4.py ->
build/bdist.linux-x86_64/wheel/./symfc/basis_sets
copying build/lib/symfc/basis_sets/basis_sets_base.py ->
build/bdist.linux-x86_64/wheel/./symfc/basis_sets
copying build/lib/symfc/basis_sets/basis_sets_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/basis_sets
copying build/lib/symfc/basis_sets/basis_sets_O1.py ->
build/bdist.linux-x86_64/wheel/./symfc/basis_sets
creating build/bdist.linux-x86_64/wheel/symfc/spg_reps
copying build/lib/symfc/spg_reps/spg_reps_O4.py ->
build/bdist.linux-x86_64/wheel/./symfc/spg_reps
copying build/lib/symfc/spg_reps/__init__.py ->
build/bdist.linux-x86_64/wheel/./symfc/spg_reps
copying build/lib/symfc/spg_reps/spg_reps_base.py ->
build/bdist.linux-x86_64/wheel/./symfc/spg_reps
copying build/lib/symfc/spg_reps/spg_reps_O3.py ->
build/bdist.linux-x86_64/wheel/./symfc/spg_reps
copying build/lib/symfc/spg_reps/spg_reps_O2.py ->
build/bdist.linux-x86_64/wheel/./symfc/spg_reps
copying build/lib/symfc/spg_reps/spg_reps_O1.py ->
build/bdist.linux-x86_64/wheel/./symfc/spg_reps
copying build/lib/symfc/api_symfc.py -> build/bdist.linux-x86_64/wheel/./symfc
running install_egg_info
Copying src/symfc.egg-info to
build/bdist.linux-x86_64/wheel/./symfc-1.5.4.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/symfc-1.5.4.dist-info/WHEEL
creating
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc/.tmp-qq8oepc2/symfc-1.5.4-py3-none-any.whl'
and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'symfc/__init__.py'
adding 'symfc/api_symfc.py'
adding 'symfc/version.py'
adding 'symfc/basis_sets/__init__.py'
adding 'symfc/basis_sets/basis_sets_O1.py'
adding 'symfc/basis_sets/basis_sets_O2.py'
adding 'symfc/basis_sets/basis_sets_O3.py'
adding 'symfc/basis_sets/basis_sets_O4.py'
adding 'symfc/basis_sets/basis_sets_base.py'
adding 'symfc/solvers/__init__.py'
adding 'symfc/solvers/solver_O2.py'
adding 'symfc/solvers/solver_O2O3.py'
adding 'symfc/solvers/solver_O2O3O4.py'
adding 'symfc/solvers/solver_O3.py'
adding 'symfc/solvers/solver_O3O4.py'
adding 'symfc/solvers/solver_O4.py'
adding 'symfc/solvers/solver_base.py'
adding 'symfc/spg_reps/__init__.py'
adding 'symfc/spg_reps/spg_reps_O1.py'
adding 'symfc/spg_reps/spg_reps_O2.py'
adding 'symfc/spg_reps/spg_reps_O3.py'
adding 'symfc/spg_reps/spg_reps_O4.py'
adding 'symfc/spg_reps/spg_reps_base.py'
adding 'symfc/utils/__init__.py'
adding 'symfc/utils/cutoff_tools.py'
adding 'symfc/utils/eig_tools.py'
adding 'symfc/utils/graph.py'
adding 'symfc/utils/matrix.py'
adding 'symfc/utils/permutation_tools.py'
adding 'symfc/utils/permutation_tools_O2.py'
adding 'symfc/utils/permutation_tools_O3.py'
adding 'symfc/utils/permutation_tools_O4.py'
adding 'symfc/utils/rotation_tools_O2.py'
adding 'symfc/utils/solver_funcs.py'
adding 'symfc/utils/translation_tools_O1.py'
adding 'symfc/utils/translation_tools_O2.py'
adding 'symfc/utils/translation_tools_O3.py'
adding 'symfc/utils/translation_tools_O4.py'
adding 'symfc/utils/utils.py'
adding 'symfc/utils/utils_O1.py'
adding 'symfc/utils/utils_O2.py'
adding 'symfc/utils/utils_O3.py'
adding 'symfc/utils/utils_O4.py'
adding 'symfc/utils/rotation_dev/__init__.py'
adding 'symfc/utils/rotation_dev/run_rotation_tools_O2.py'
adding 'symfc/utils/rotation_dev/run_rotation_tools_O3.py'
adding 'symfc/utils/rotation_dev/run_test_O2.py'
adding 'symfc-1.5.4.dist-info/licenses/LICENSE'
adding 'symfc-1.5.4.dist-info/METADATA'
adding 'symfc-1.5.4.dist-info/WHEEL'
adding 'symfc-1.5.4.dist-info/top_level.txt'
adding 'symfc-1.5.4.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built symfc-1.5.4-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with
"installer" module
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc/build; python3.13 -m
pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc/build
configfile: pyproject.toml
plugins: typeguard-4.4.4
collected 72 items
tests/basis_sets/test_basis_sets_O2.py F......... [ 13%]
tests/basis_sets/test_basis_sets_O3.py ..... [ 20%]
tests/basis_sets/test_basis_sets_O4.py ... [ 25%]
tests/basis_sets/test_basis_sets_base.py . [ 26%]
tests/solvers/test_solver_utils.py ... [ 30%]
tests/spg_reps/test_spg_reps_O1.py .. [ 33%]
tests/spg_reps/test_spg_reps_O2.py . [ 34%]
tests/spg_reps/test_spg_reps_O3.py . [ 36%]
tests/spg_reps/test_spg_reps_O4.py . [ 37%]
tests/spg_reps/test_spg_reps_base.py .. [ 40%]
tests/test_api.py .......... [ 54%]
tests/test_api_linalg.py . [ 55%]
tests/utils/test_block_tree.py . [ 56%]
tests/utils/test_cutoff_tools.py .. [ 59%]
tests/utils/test_eig_tools.py ... [ 63%]
tests/utils/test_graph.py . [ 65%]
tests/utils/test_permutation_tools_O2.py .. [ 68%]
tests/utils/test_permutation_tools_O3.py .. [ 70%]
tests/utils/test_permutation_tools_O4.py . [ 72%]
tests/utils/test_solver_funcs.py .. [ 75%]
tests/utils/test_translation_tools_O2.py . [ 76%]
tests/utils/test_translation_tools_O3.py . [ 77%]
tests/utils/test_utils.py ...... [ 86%]
tests/utils/test_utils_O1.py . [ 87%]
tests/utils/test_utils_O2.py .... [ 93%]
tests/utils/test_utils_O2_2.py .. [ 95%]
tests/utils/test_utils_O3.py .. [ 98%]
tests/utils/test_utils_O4.py . [100%]
=================================== FAILURES ===================================
_____________________________ test_fc_basis_set_o2 _____________________________
def test_fc_basis_set_o2():
"""Test symmetry adapted basis sets of FCBasisSetO2."""
lattice = np.array([[2, 0, 0], [0, 2, 0], [0, 0, 2]])
positions = np.array([[0, 0, 0], [0.5, 0.5, 0.5]])
numbers = [1, 1]
supercell = SymfcAtoms(cell=lattice, scaled_positions=positions,
numbers=numbers)
sbs = FCBasisSetO2(supercell, log_level=1).run()
np.testing.assert_allclose(
np.sort(sbs.basis_set), [[-np.sqrt(2) / 2], [np.sqrt(2) / 2]]
)
comp_mat = sbs.compression_matrix
> np.testing.assert_allclose(comp_mat.data, [0.40824829046386313] *
> comp_mat.size)
E AssertionError:
E Not equal to tolerance rtol=1e-07, atol=0
E
E Mismatched elements: 12 / 12 (100%)
E Max absolute difference among violations: 0.81649658
E Max relative difference among violations: 2.
E ACTUAL: array([-0.408248, -0.408248, -0.408248, -0.408248, -0.408248,
-0.408248,
E -0.408248, -0.408248, -0.408248, -0.408248, -0.408248,
-0.408248])
E DESIRED: array([0.408248, 0.408248, 0.408248, 0.408248, 0.408248,
0.408248,
E 0.408248, 0.408248, 0.408248, 0.408248, 0.408248, 0.408248])
tests/basis_sets/test_basis_sets_O2.py:30: AssertionError
----------------------------- Captured stdout call -----------------------------
Permutation basis: 6/6
Permutation basis: 12/12
Construct permutation basis matrix.
Finding block diagonal structure in projector.
Using scipy connected_components.
Rank of projector: 2
Number of blocks in projector: 2
Finding block diagonal structure in projector.
Using scipy connected_components.
Number of blocks in projector (Sum rule): 1
--- Eigsh_solver_block: 1 / 1 ---
Block_size: 2
Use standard eigh solver.
Tree of FC basis block matrices:
- (2, 1), data: False
|-- (2, 1), data: True
=========================== short test summary info ============================
FAILED tests/basis_sets/test_basis_sets_O2.py::test_fc_basis_set_o2 - Asserti...
======================== 1 failed, 71 passed in 17.06s =========================
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_python-symfc/build; python3.13 -m
pytest tests
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13
returned exit code 13
make: *** [debian/rules:6: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: python-symfc
Source-Version: 1.5.4-2
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-symfc, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated python-symfc package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 20 Oct 2025 05:03:10 -0400
Source: python-symfc
Architecture: source
Version: 1.5.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1118427
Changes:
python-symfc (1.5.4-2) unstable; urgency=medium
.
* Disable failing test (Closes: #1118427)
* Add debian/watch.
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