Your message dated Tue, 04 Nov 2025 20:37:39 +0000
with message-id <[email protected]>
and subject line Bug#1120066: fixed in python-gffutils 0.13-4
has caused the Debian Bug report #1120066,
regarding python-gffutils: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1120066: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1120066
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-gffutils
Version: 0.13-3
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: nocheck
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0], we noticed that
python-gffutils could not be built reproducibly.
This is because it generates different content in the binary file
depending on whether the tests are run. In particular, the tests
leave around this file:
/usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gtf.db
Patch attached that expands the existing cleanup after calling
dh_install, but there are likely other solutions.
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/rules 2025-11-04 10:52:26.223321734 -0800
--- b/debian/rules 2025-11-04 10:54:37.973815723 -0800
@@ -63,4 +63,4 @@
override_dh_install:
dh_install
find debian -name "*.bak" -delete
- find debian -name "issue_*.db" -delete
+ find debian -name "*.db" -delete
--- End Message ---
--- Begin Message ---
Source: python-gffutils
Source-Version: 0.13-4
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-gffutils, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated python-gffutils
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 04 Nov 2025 20:54:03 +0100
Source: python-gffutils
Architecture: source
Version: 0.13-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1120066
Changes:
python-gffutils (0.13-4) unstable; urgency=medium
.
* d/rules: preserve original FBgn0031208.gtf.db.
Thanks to Chris Lamb (Closes: #1120066)
* d/watch: convert to PyPI watch file v5.
* pytest8.4.patch: file the dep3 header.
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