Your message dated Wed, 19 Nov 2025 21:34:55 +0000
with message-id <[email protected]>
and subject line Bug#1049705: fixed in libchado-perl 1.31-7
has caused the Debian Bug report #1049705,
regarding libchado-perl: Fails to build binary packages again after successful
build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1049705: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1049705
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libchado-perl
Version: 1.31-6
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to do build a binary-only build (not source) after a
successful build (dpkg-buildpackage ; dpkg-buildpackage -b).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -b
> --------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package libchado-perl
> dpkg-buildpackage: info: source version 1.31-6
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Olivier Sallou <[email protected]>
> dpkg-source --before-build .
> dpkg-buildpackage: info: host architecture amd64
> fakeroot debian/rules clean
> dh clean --buildsystem=perl_makemaker
> dh_auto_clean -O--buildsystem=perl_makemaker
> make -j8 distclean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> rm -f \
> blib/script/gmod_add_organism.pl blib/script/gmod_apollo_triggers.pl \
> blib/script/gmod_bulk_load_gff3.pl blib/script/gmod_bulk_load_pubmed.pl \
> blib/script/gmod_chado_properties.pl
> blib/script/gmod_extract_dbxref_from_gff.pl \
> blib/script/gmod_fasta2gff3.pl blib/script/gmod_gff3_preprocessor.pl \
> blib/script/gmod_load_cvterms.pl blib/script/gmod_make_cvtermpath.pl \
> blib/script/gmod_make_gff_from_dbxref.pl
> blib/script/gmod_materialized_view_tool.pl \
> blib/script/gmod_sort_gff3.pl
> "/usr/bin/perl" "-MExtUtils::Manifest=fullcheck" -e fullcheck
> rm -f \
> chado.bso chado.def \
> chado.exp chado.x \
> blib/arch/auto/chado/extralibs.all \
> blib/arch/auto/chado/extralibs.ld Makefile.aperl \
> *.a *.o \
> *perl.core MYMETA.json \
> MYMETA.yml blibdirs.ts \
> core core.*perl.*.? \
> core.[0-9] core.[0-9][0-9] \
> core.[0-9][0-9][0-9] core.[0-9][0-9][0-9][0-9] \
> core.[0-9][0-9][0-9][0-9][0-9] libchado.def \
> mon.out perl \
> perl perl.exe \
> perlmain.c pm_to_blib \
> pm_to_blib.ts so_locations \
> tmon.out
> rm -rf \
> chado-1.31.tar.gz /<<PKGBUILDDIR>>/debian/libchado-perl/tmp \
> Build _build \
> blib build.conf \
> lib/Bio/Chado/AutoDBI.pm load/etc/load.conf
> mv Makefile Makefile.old > /dev/null 2>&1
> rm -f \
> Makefile Makefile.old
> rm -rf \
> chado-1.31
> /tmp/pytest-of-user42/pytest-5/test_jobs_resubmit_urlcurrent is encountered a
> second time at /usr/share/perl/5.36/File/Find.pm line 78.
> make[1]: *** [Makefile:843: distcheck] Error 2
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_clean: error: make -j8 distclean returned exit code 2
> make: *** [debian/rules:13: clean] Error 25
> dpkg-buildpackage: error: fakeroot debian/rules clean subprocess returned
> exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -b' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/16/libchado-perl_1.31-6_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: libchado-perl
Source-Version: 1.31-7
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libchado-perl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated libchado-perl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 19 Nov 2025 22:20:00 +0100
Source: libchado-perl
Architecture: source
Version: 1.31-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1047661 1049705
Changes:
libchado-perl (1.31-7) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* Packaging update
* Standards-Version: 4.6.2 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Remove trailing whitespace in debian/rules (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* No tab in license text (routine-update)
* Trim trailing whitespace.
* Move libmodule-build-perl from Build-Depends-Indep to Build-Depends.
* Set upstream metadata fields: Archive, Bug-Database.
.
[ Olivier Sallou ]
* Fix lintian overrides.
.
[ Alexandre Detiste ]
* d/README.source: Do not mention quilt, it's the default.
.
[ Santiago Vila ]
* Fix clean target. Closes: #1047661, #1049705.
* d/control: Drop "Rules-Requires-Root: no" (default).
* d/control: Drop "Priority: optional" (default).
* d/control: Update standards-version.
* d/salsa-ci.yml: Use the simplified version.
* d/salsa-ci.yml: Temporarily allow autopkgtest job to fail.
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