Your message dated Fri, 21 Nov 2025 19:10:14 +0000
with message-id <[email protected]>
and subject line Bug#1114196: fixed in macromoleculebuilder 4.2+dfsg-1
has caused the Debian Bug report #1114196,
regarding macromoleculebuilder FTBFS with Gemmi 0.7
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1114196: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1114196
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:macromoleculebuilder
Version: 4.0.0+dfsg-5
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:macromoleculebuilder, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-DCMAKE_BUILD_TYPE=Release \
-DENABLE_LEPTON=OFF \
-DGEMMI_DIR=/usr \
-DOpenMM_INCLUDE_DIR=/usr/include \
[... snipped ...]
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//No help, variable specified on the command line.
FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON
//Path to where Gemmi library is installed. This needs to be set
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GEMMI_DIR:STRING=/usr
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//Path to where SeqAn library is installed. This needs to be set
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SEQAN_DIR:STRING=
//No help, variable specified on the command line.
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//The directory containing a CMake configuration file for Simbody.
Simbody_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/simbody
//Path to a file.
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//Path to a library.
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dh_auto_configure: error: cd obj-x86_64-linux-gnu &&
DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake
-DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None
-DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
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BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -O0" .. returned exit code 1
make[1]: *** [debian/rules:12: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:9: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: macromoleculebuilder
Source-Version: 4.2+dfsg-1
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
macromoleculebuilder, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated macromoleculebuilder
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 21 Nov 2025 07:44:58 -0500
Source: macromoleculebuilder
Binary: libmmb-dev libmmb4.1 libmmb4.1-dbgsym mmb mmb-common mmb-dbgsym
Architecture: source amd64 all
Version: 4.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Description:
libmmb-dev - development files of MacroMoleculeBuilder
libmmb4.1 - shared library of MacroMoleculeBuilder
mmb - model the structure and dynamics of macromolecules
mmb-common - model the structure and dynamics of macromolecules (common files)
Closes: 1113261 1114196
Changes:
macromoleculebuilder (4.2+dfsg-1) unstable; urgency=medium
.
* New upstream release 4.2+dfsg (Closes: #1113261)
* Update file exclusion list.
* Review patches.
* Fix incompatibility with gemmi >= 0.7.0 (Closes: #1114196)
* Adjust to soname change.
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