Your message dated Sun, 30 Nov 2025 15:19:31 +0000
with message-id <[email protected]>
and subject line Bug#1114293: fixed in python-anndata 0.12.6-1
has caused the Debian Bug report #1114293,
regarding python-anndata: FTBFS: dh_auto_test: error: pybuild --test
--test-pytest -i python{version} -p 3.13 returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1114293: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1114293
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:python-anndata
Version: 0.12.0~rc1-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-anndata, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build"
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_anndata
* Building wheel...
[... snipped ...]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[inner-dont-load-annotation-index-zarr-scipy-csc-var-None]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[inner-dont-load-annotation-index-zarr-scipy-csc-obsm-df]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[inner-dont-load-annotation-index-zarr-scipy-csc-varm-df]
ERROR
tests/lazy/test_concat.py::test_concat_data_with_cluster_to_memory[outer-dont-load-annotation-index-zarr-scipy-csc]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csc-slice]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csc-consecutive
integer array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csc-random
integer array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csc-boolean
array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csc-full
slice]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csc-categorical_subset]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csc-No
index]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[outer-dont-load-annotation-index-zarr-scipy-csc-obs-None]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[outer-dont-load-annotation-index-zarr-scipy-csc-var-None]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[outer-dont-load-annotation-index-zarr-scipy-csc-obsm-df]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[outer-dont-load-annotation-index-zarr-scipy-csc-varm-df]
ERROR
tests/lazy/test_read.py::test_uns_uses_dask[dont-load-annotation-index-zarr-scipy-csc]
ERROR
tests/lazy/test_read.py::test_to_memory[dont-load-annotation-index-zarr-scipy-csc]
ERROR
tests/lazy/test_read.py::test_view_to_memory[dont-load-annotation-index-zarr-scipy-csc]
ERROR
tests/lazy/test_read.py::test_view_of_view_to_memory[dont-load-annotation-index-zarr-scipy-csc]
ERROR
tests/lazy/test_concat.py::test_concat_data_with_cluster_to_memory[inner-dont-load-annotation-index-zarr-scipy-csr]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[inner-dont-load-annotation-index-zarr-scipy-csr-slice]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[inner-dont-load-annotation-index-zarr-scipy-csr-consecutive
integer array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[inner-dont-load-annotation-index-zarr-scipy-csr-random
integer array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[inner-dont-load-annotation-index-zarr-scipy-csr-boolean
array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[inner-dont-load-annotation-index-zarr-scipy-csr-full
slice]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[inner-dont-load-annotation-index-zarr-scipy-csr-categorical_subset]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[inner-dont-load-annotation-index-zarr-scipy-csr-No
index]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[inner-dont-load-annotation-index-zarr-scipy-csr-obs-None]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[inner-dont-load-annotation-index-zarr-scipy-csr-var-None]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[inner-dont-load-annotation-index-zarr-scipy-csr-obsm-df]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[inner-dont-load-annotation-index-zarr-scipy-csr-varm-df]
ERROR
tests/lazy/test_concat.py::test_concat_data_with_cluster_to_memory[outer-dont-load-annotation-index-zarr-scipy-csr]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csr-slice]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csr-consecutive
integer array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csr-random
integer array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csr-boolean
array]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csr-full
slice]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csr-categorical_subset]
ERROR
tests/lazy/test_concat.py::test_concat_data_subsetting[outer-dont-load-annotation-index-zarr-scipy-csr-No
index]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[outer-dont-load-annotation-index-zarr-scipy-csr-obs-None]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[outer-dont-load-annotation-index-zarr-scipy-csr-var-None]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[outer-dont-load-annotation-index-zarr-scipy-csr-obsm-df]
ERROR
tests/lazy/test_concat.py::test_concat_df_ds_mixed_types[outer-dont-load-annotation-index-zarr-scipy-csr-varm-df]
ERROR
tests/lazy/test_read.py::test_uns_uses_dask[dont-load-annotation-index-zarr-scipy-csr]
ERROR
tests/lazy/test_read.py::test_to_memory[dont-load-annotation-index-zarr-scipy-csr]
ERROR
tests/lazy/test_read.py::test_view_to_memory[dont-load-annotation-index-zarr-scipy-csr]
ERROR
tests/lazy/test_read.py::test_view_of_view_to_memory[dont-load-annotation-index-zarr-scipy-csr]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-raw-X]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-obs-cat]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-obs-int64]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-obs-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-var-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-obsm-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-varm-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-obsp-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-varp-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-layers-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-X-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-raw-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csc-uns-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-raw-X]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-obs-cat]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-obs-int64]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-obs-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-var-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-obsm-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-varm-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-obsp-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-varp-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-layers-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-X-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-raw-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csc-uns-None]
ERROR tests/lazy/test_read.py::test_access_count_subset[scipy-csc] - ValueErr...
ERROR
tests/lazy/test_read.py::test_access_count_subset_column_compute[scipy-csc]
ERROR tests/lazy/test_read.py::test_access_count_index[scipy-csc] - ValueErro...
ERROR tests/lazy/test_read.py::test_access_count_dtype[scipy-csc] - ValueErro...
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-raw-X]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-obs-cat]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-obs-int64]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-obs-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-var-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-obsm-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-varm-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-obsp-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-varp-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-layers-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-X-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-raw-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[subset-scipy-csr-uns-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-raw-X]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-obs-cat]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-obs-int64]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-obs-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-var-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-obsm-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-varm-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-obsp-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-varp-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-layers-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-X-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-raw-None]
ERROR
tests/lazy/test_read.py::test_access_count_elem_access[full-scipy-csr-uns-None]
ERROR tests/lazy/test_read.py::test_access_count_subset[scipy-csr] - ValueErr...
ERROR
tests/lazy/test_read.py::test_access_count_subset_column_compute[scipy-csr]
ERROR tests/lazy/test_read.py::test_access_count_index[scipy-csr] - ValueErro...
ERROR tests/lazy/test_read.py::test_access_count_dtype[scipy-csr] - ValueErro...
ERROR
tests/lazy/test_concat.py::test_concat_to_memory_obs_access_count[outer-subset-vars_different]
ERROR
tests/lazy/test_concat.py::test_concat_to_memory_obs[outer-subset-vars_different]
ERROR
tests/lazy/test_concat.py::test_concat_to_memory_var[outer-subset-vars_different]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obs-cat-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obs-cat-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obs-int64-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obs-int64-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obs-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obs-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-var-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-var-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obsm-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obsm-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-varm-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-varm-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obsp-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-obsp-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-varp-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-varp-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-layers-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-layers-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-X-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-X-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-raw-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-raw-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-uns-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[subset-vars_different-uns-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_to_memory_obs_dtypes[outer-vars_same]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obs-cat-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obs-cat-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obs-int64-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obs-int64-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obs-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obs-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-var-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-var-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obsm-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obsm-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-varm-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-varm-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obsp-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-obsp-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-varp-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-varp-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-layers-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-layers-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-X-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-X-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-raw-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-raw-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-uns-None-outer]
ERROR
tests/lazy/test_concat.py::test_concat_access_count[full-vars_same-uns-None-inner]
ERROR
tests/lazy/test_concat.py::test_concat_to_memory_obs_dtypes[outer-vars_different]
ERROR tests/test_backed_sparse.py::test_empty_backed_indexing[zarr2-empty_list]
ERROR
tests/test_backed_sparse.py::test_empty_backed_indexing[zarr2-empty_bool_mask]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[slice_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[single_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_int_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_int_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[array_bool_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[list_bool_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[matrix_bool_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[spmatrix_bool_subset-sparray_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-array_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-slice_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-single_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-array_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-list_int_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-array_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-list_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-matrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-spmatrix_bool_subset-zarr2]
ERROR
tests/test_backed_sparse.py::test_backed_indexing[sparray_bool_subset-sparray_bool_subset-zarr2]
ERROR tests/test_backed_sparse.py::test_backed_ellipsis_indexing[zarr2-ellipsis]
ERROR
tests/test_backed_sparse.py::test_backed_ellipsis_indexing[zarr2-ellipsis_tuple]
ERROR
tests/test_backed_sparse.py::test_backed_ellipsis_indexing[zarr2-obs-ellipsis]
ERROR
tests/test_backed_sparse.py::test_backed_ellipsis_indexing[zarr2-var-ellipsis]
ERROR
tests/test_backed_sparse.py::test_backed_ellipsis_indexing[zarr2-obs-var-ellipsis]
ERROR
tests/test_backed_sparse.py::test_backed_ellipsis_indexing[zarr2-ellipsis-obs-var]
ERROR
tests/test_backed_sparse.py::test_backed_ellipsis_indexing[zarr2-obs-ellipsis-var]
ERROR tests/test_backed_sparse.py::test_consecutive_bool[zarr2-randomized] - ...
ERROR tests/test_backed_sparse.py::test_consecutive_bool[zarr2-alternating_15]
ERROR tests/test_backed_sparse.py::test_consecutive_bool[zarr2-alternating_5]
ERROR tests/test_backed_sparse.py::test_consecutive_bool[zarr2-one_group] - V...
ERROR tests/test_backed_sparse.py::test_consecutive_bool[zarr2-one_elem] - Va...
ERROR tests/test_backed_sparse.py::test_backed_sizeof[zarr2] - ValueError: Za...
= 335 failed, 4366 passed, 602 skipped, 143 xfailed, 1524 warnings, 583 errors
in 564.83s (0:09:24) =
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_anndata/build'; python3.13 -m pytest
-v tests/
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13
returned exit code 13
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: python-anndata
Source-Version: 0.12.6-1
Done: Michael R. Crusoe <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-anndata, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated python-anndata
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 30 Nov 2025 16:08:41 +0100
Source: python-anndata
Architecture: source
Version: 0.12.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 1114293
Changes:
python-anndata (0.12.6-1) unstable; urgency=medium
.
[ Alexandre Detiste ]
* New upstream version 0.12.0~rc4
* refresh patches
.
[ Michael R. Crusoe ]
* New upstream version. Closes: #1114293
* d/rules: run the tests in parallel
* d/control: tests/test_io_backwards_compat.py::test_no_diff needs
h5diff from hdf5-tools.
* d/copyright: update a path
* Freshen patch metadata
* Switch to autopkgtest-pkg-pybuild
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