Your message dated Fri, 05 Dec 2025 03:33:53 +0000
with message-id <[email protected]>
and subject line Bug#1121393: fixed in h5py 3.15.1-4
has caused the Debian Bug report #1121393,
regarding h5py: FTBFS with Python 3.14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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1121393: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1121393
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: h5py
Version: 3.15.1-3
Severity: important
Tags: ftbfs
User: [email protected]
Usertags: python3.14
Hi Maintainer
h5py will FTBFS once Python 3.14 is added as a supported version in Debian.
I've copied what I hope is the relevant part of the log below, seen in Ubuntu,
It looks like lzf_filter.o is being linked more than once.
Regards
Graham
cd build-h5py_mpi; \
x86_64-linux-gnu-gcc `find . -name lzf_filter.o` -Wdate-time
-D_FORTIFY_SOURCE=3 -g -O2 -Werror=implicit-function-declaration
-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection
-fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/h5py-3.15.1-3
-I/usr/include/liblzf -Wl,-Bsymbolic-functions
-Wl,--package-metadata={%22type%22:%22deb%22%2C%22os%22:%22ubuntu%22%2C%22name%22:%22h5py%22%2C%22version%22:%223.15.1-3%22%2C%22architecture%22:%22amd64%22}
-flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now
-I/usr/include/hdf5/openmpi
-I/usr/lib/x86_64-linux-gnu/openmpi/lib/../../fortran/gfortran-mod-16/openmpi
-I/usr/lib/x86_64-linux-gnu/openmpi/include
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-I/usr/include/liblzf -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5
-L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08
-lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -llzf -fPIC -shared -o
liblzf_filter.so
/usr/bin/ld:
./build/temp.linux-x86_64-cpython-314/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin): in function `lzf_set_local':
(.text+0x0): multiple definition of `lzf_set_local';
./build/temp.linux-x86_64-cpython-313/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin):(.text+0x0): first defined here
/usr/bin/ld:
./build/temp.linux-x86_64-cpython-314/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin): in function `lzf_set_local':
(.text+0x0): multiple definition of `lzf_filter';
./build/temp.linux-x86_64-cpython-313/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin):(.text+0x0): first defined here
/usr/bin/ld:
./build/temp.linux-x86_64-cpython-314/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin): in function `lzf_set_local':
(.text+0x0): multiple definition of `H5PLget_plugin_type';
./build/temp.linux-x86_64-cpython-313/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin):(.text+0x0): first defined here
/usr/bin/ld:
./build/temp.linux-x86_64-cpython-314/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin): in function `lzf_set_local':
(.text+0x0): multiple definition of `H5PLget_plugin_info';
./build/temp.linux-x86_64-cpython-313/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin):(.text+0x0): first defined here
/usr/bin/ld:
./build/temp.linux-x86_64-cpython-314/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin): in function `lzf_set_local':
(.text+0x0): multiple definition of `register_lzf';
./build/temp.linux-x86_64-cpython-313/<<PKGBUILDDIR>>/build-h5py_mpi/lzf/lzf_filter.o
(symbol from plugin):(.text+0x0): first defined here
collect2: error: ld returned 1 exit status
--- End Message ---
--- Begin Message ---
Source: h5py
Source-Version: 3.15.1-4
Done: Stuart Prescott <[email protected]>
We believe that the bug you reported is fixed in the latest version of
h5py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Stuart Prescott <[email protected]> (supplier of updated h5py package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 05 Dec 2025 11:45:30 +1100
Source: h5py
Architecture: source
Version: 3.15.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Stuart Prescott <[email protected]>
Closes: 1121393
Changes:
h5py (3.15.1-4) unstable; urgency=medium
.
* Team upload.
* Fix build with multiple supported interpreters in the archive,
cherry-picking the patch from Ubuntu (Closes: #1121393).
* Add ca-certificates to autopkgtests for curl.
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fp=90e2d2c1ad146a1b7ebb891dbbc17ebb1396f2f7
Git-Tag-Tagger: Stuart Prescott <[email protected]>
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