Your message dated Sun, 21 Dec 2025 21:39:31 +0000
with message-id <[email protected]>
and subject line Bug#1113797: fixed in ncbi-igblast 1.20.0-4
has caused the Debian Bug report #1113797,
regarding ncbi-igblast FTCBFS: does not pass --host to configure
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1113797: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1113797
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ncbi-igblast
Version: 1.20.0-2
Tags: patch
User: [email protected]
Usertags: ftcbfs
ncbi-igblast fails to cross build from source, because it attempts to
build for the build architecture and configure doesn't like the host
architecture's compiler flags. The root cause is not passing the --host
flag. I'm attaching a patch to add it. Please consider applying it.
Helmut
diff -Nru ncbi-igblast-1.20.0/debian/changelog
ncbi-igblast-1.20.0/debian/changelog
--- ncbi-igblast-1.20.0/debian/changelog 2025-03-07 08:22:46.000000000
+0100
+++ ncbi-igblast-1.20.0/debian/changelog 2025-09-02 12:36:04.000000000
+0200
@@ -1,3 +1,10 @@
+ncbi-igblast (1.20.0-2.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTCBFS: Pass --build/--host to configure. (Closes: #-1)
+
+ -- Helmut Grohne <[email protected]> Tue, 02 Sep 2025 12:36:04 +0200
+
ncbi-igblast (1.20.0-2) unstable; urgency=medium
* Link in internal_data/ directory locally for autopkgtest, as it does not
diff -Nru ncbi-igblast-1.20.0/debian/rules ncbi-igblast-1.20.0/debian/rules
--- ncbi-igblast-1.20.0/debian/rules 2025-03-07 08:22:05.000000000 +0100
+++ ncbi-igblast-1.20.0/debian/rules 2025-09-02 12:36:04.000000000 +0200
@@ -1,5 +1,7 @@
#!/usr/bin/make -f
+include /usr/share/dpkg/architecture.mk
+
%:
dh $@ --sourcedirectory=c++
@@ -14,6 +16,8 @@
override_dh_auto_configure:
cd c++ && yes | \
./configure.orig --prefix=/usr \
+ --build=$(DEB_BUILD_GNU_TYPE) \
+ --host=$(DEB_HOST_GNU_TYPE) \
--with-mbedtls \
--with-openmp $(WITH_OPTIM) \
--with-vdb=/usr VDB_INCLUDE="$(VDB_INCLUDE)" \
--- End Message ---
--- Begin Message ---
Source: ncbi-igblast
Source-Version: 1.20.0-4
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ncbi-igblast, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated ncbi-igblast package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 21 Dec 2025 22:07:09 +0100
Source: ncbi-igblast
Architecture: source
Version: 1.20.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1048966 1113797
Changes:
ncbi-igblast (1.20.0-4) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* d/watch: version=5
* Fix clean target
Closes: #1048966
* Standards-Version: 4.7.2 (routine-update)
* debputy lint --auto-fix (routine-update)
* Update lintian override info format in d/source/lintian-overrides.
.
[ Helmut Grohne ]
* Fix FTCBFS: Pass --build/--host to configure. (Closes: #1113797)
Checksums-Sha1:
d8677c81ac2baaec58d2e6911e31f30767a06caf 2165 ncbi-igblast_1.20.0-4.dsc
a51777167b15270921edd937b8b5adc5458893f2 13476
ncbi-igblast_1.20.0-4.debian.tar.xz
8f94324c83d326b46f9e4f9465791c1396eb84c0 25073
ncbi-igblast_1.20.0-4_source.buildinfo
Checksums-Sha256:
eb63555c688cf1320ef76a512d749f69d27af67003bf176dde642e8fd467bfbe 2165
ncbi-igblast_1.20.0-4.dsc
893b8978536fb08878309da3472e4889e3ff8f98b953f316c49e50d96cd9a7a3 13476
ncbi-igblast_1.20.0-4.debian.tar.xz
55d052822e7485742689f3b979ab9aa3a26900cdc97316231e170f233dc4cfa4 25073
ncbi-igblast_1.20.0-4_source.buildinfo
Files:
73cbb128f14d5edd2b15478f3fe9a3fc 2165 science optional
ncbi-igblast_1.20.0-4.dsc
6dc6233fc01f67442c8a6845c79b55f5 13476 science optional
ncbi-igblast_1.20.0-4.debian.tar.xz
4258b12f48527749240372ace59482b7 25073 science optional
ncbi-igblast_1.20.0-4_source.buildinfo
-----BEGIN PGP SIGNATURE-----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=+mlf
-----END PGP SIGNATURE-----
pgpVb2So2MZtU.pgp
Description: PGP signature
--- End Message ---
