Your message dated Tue, 10 Feb 2026 11:05:06 +0000
with message-id <[email protected]>
and subject line Bug#1043647: fixed in bali-phy 4.1+dfsg-1
has caused the Debian Bug report #1043647,
regarding bali-phy: Fails to build source after successful build
to be marked as done.
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Bug report if necessary, and/or fix the problem forthwith.
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--
1043647: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1043647
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: bali-phy
Version: 3.6.1+dfsg-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> ----------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package bali-phy
> dpkg-buildpackage: info: source version 3.6.1+dfsg-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean --buildsystem=meson
> dh_auto_clean -O--buildsystem=meson
> dh_autoreconf_clean -O--buildsystem=meson
> dh_clean -O--buildsystem=meson
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building bali-phy using existing
> ./bali-phy_3.6.1+dfsg.orig.tar.xz
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Codons/1/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Codons/2/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Codons/3/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Codons/AUTGC/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Codons/stop/1/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Codons/stop/2/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/DNA-RNA/1/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/DNA-RNA/2/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/DNA-RNA/3/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Triplets/1/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Triplets/2/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/IO/errors/Triplets/AUTGC/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/haskell/Data/Map/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/haskell/IO/1/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/haskell/IO/3/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/haskell/Ord/1/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/haskell/Ord/2/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/haskell/Ord/3/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/haskell/parse/1/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/BAliPhy.Main.hs has
> no final newline (either original or modified version)
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/ignore-output-1/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/1/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/10/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/11/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/12/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/13/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/14/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/15/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/16/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/2/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/3/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/4/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/5/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/6/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/7/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/8/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/9/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/eta-reduction/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/optimizer/pat-bind/obtained-output' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/10/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/10/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/11/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/11/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/12/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/12/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/13/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/13/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/14/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/14/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/16/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/16/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/17/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/17/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/18/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/18/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/19/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/19/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/21/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/21/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/22/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/22/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/23/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/23/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/24/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/24/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/25/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/25/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/26/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/26/obtained-error' will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/3/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'tests/parse/3/obtained-error'
> will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/4/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'tests/parse/4/obtained-error'
> will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/5/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'tests/parse/5/obtained-error'
> will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/6/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'tests/parse/6/obtained-error'
> will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/7/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'tests/parse/7/obtained-error'
> will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/8/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'tests/parse/8/obtained-error'
> will not be represented in diff
> dpkg-source: warning: file bali-phy-3.6.1+dfsg/tests/parse/9/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'tests/parse/9/obtained-error'
> will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/M3/1/BAliPhy.Main.hs has no final newline
> (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/M3/1/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/M3/2/BAliPhy.Main.hs has no final newline
> (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/M3/2/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/constraints/1/BAliPhy.Main.hs has no final
> newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/error/1/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/error/2/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/error/3/obtained-output' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/error/4/obtained-output' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/functions/1/BAliPhy.Main.hs has no final
> newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/functions/1/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Codons/dna/BAliPhy.Main.hs has
> no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/guess-alphabet/Codons/dna/obtained-error' will not be
> represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Codons/rna/BAliPhy.Main.hs has
> no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/guess-alphabet/Codons/rna/obtained-error' will not be
> represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Triplets/dna/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/guess-alphabet/Triplets/dna/obtained-error' will not be
> represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Triplets/rna/BAliPhy.Main.hs
> has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/guess-alphabet/Triplets/rna/obtained-error' will not be
> represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/aa/BAliPhy.Main.hs has no
> final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/guess-alphabet/aa/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/dna/BAliPhy.Main.hs has no
> final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/guess-alphabet/dna/obtained-error' will not be represented in
> diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/rna/BAliPhy.Main.hs has no
> final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/guess-alphabet/rna/obtained-error' will not be represented in
> diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/1/BAliPhy.Main.hs has no final
> newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/int-to-double/1/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/2/BAliPhy.Main.hs has no final
> newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/int-to-double/2/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/3/BAliPhy.Main.hs has no final
> newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/int-to-double/3/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/let/1/BAliPhy.Main.hs has no final newline
> (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/let/1/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/partitions/1/BAliPhy.Main.hs has no final
> newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/1/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/2/obtained-output' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/partitions/3/BAliPhy.Main.hs has no final
> newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/4/obtained-output' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/1/BAliPhy.Main.hs has no
> final newline (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/link/1/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/link/2/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/link/3/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/link/4/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/link/5/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/link/6/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/link/7/obtained-output' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/parse/partitions/link/8/obtained-output' will not be represented in
> diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/9/BAliPhy.Main.hs has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/x3/1/BAliPhy.Main.hs has no final newline
> (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/x3/1/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/x3/2/BAliPhy.Main.hs has no final newline
> (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/x3/2/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/x3/3/BAliPhy.Main.hs has no final newline
> (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/x3/3/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/x3/4/BAliPhy.Main.hs has no final newline
> (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/x3/4/obtained-error' will not be represented in diff
> dpkg-source: warning: file
> bali-phy-3.6.1+dfsg/tests/parse/x3/5/BAliPhy.Main.hs has no final newline
> (either original or modified version)
> dpkg-source: warning: newly created empty file
> 'tests/parse/x3/5/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file 'tests/print/1/obtained-error'
> will not be represented in diff
> dpkg-source: warning: newly created empty file 'tests/print/2/obtained-error'
> will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/demos/1/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/demos/2/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/demos/3/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/demos/4/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/demos/5/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/demos/6/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/demos/airline/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/demos/coalmine/obtained-error' will not be represented in
> diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/infer_tree/1/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/lazy_sample/1/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/lazy_sample/2/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/lazy_sample/3/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/observe/1/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/popgen/li_stephens/obtained-error' will not be represented
> in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/sample_tree/2/obtained-error' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'tests/prob_prog/sample_tree/3/obtained-error' will not be represented in diff
> dpkg-source: info: local changes detected, the modified files are:
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/2/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/3/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/AUTGC/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/AUTGC/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/stop/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/stop/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/stop/2/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Codons/stop/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/DNA-RNA/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/DNA-RNA/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/DNA-RNA/2/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/DNA-RNA/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/DNA-RNA/3/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/DNA-RNA/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/Triplets/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Triplets/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/Triplets/2/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Triplets/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/IO/errors/Triplets/AUTGC/obtained-error
> bali-phy-3.6.1+dfsg/tests/IO/errors/Triplets/AUTGC/obtained-exit
> bali-phy-3.6.1+dfsg/tests/haskell/Data/Map/obtained-exit
> bali-phy-3.6.1+dfsg/tests/haskell/Data/Map/obtained-output
> bali-phy-3.6.1+dfsg/tests/haskell/IO/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/haskell/IO/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/haskell/IO/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/haskell/IO/3/obtained-output
> bali-phy-3.6.1+dfsg/tests/haskell/Ord/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/haskell/Ord/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/haskell/Ord/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/haskell/Ord/2/obtained-output
> bali-phy-3.6.1+dfsg/tests/haskell/Ord/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/haskell/Ord/3/obtained-output
> bali-phy-3.6.1+dfsg/tests/haskell/parse/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/haskell/parse/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/C1.MAP
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/C1.P1.fastas
>
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/C1.P1.initial.fasta
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/C1.log
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/ignore-output-1/C1.trees
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/obtained-error
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/obtained-exit
> bali-phy-3.6.1+dfsg/tests/mcmc/fixed-scale/obtained-output
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/C1.MAP
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/C1.P1.initial.fasta
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/C1.log
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/ignore-output-1/C1.trees
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/obtained-error
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/obtained-exit
> bali-phy-3.6.1+dfsg/tests/mcmc/no-imodel/obtained-output
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/ignore-output-1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/ignore-output-1/C1.MAP
>
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/ignore-output-1/C1.P1.initial.fasta
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/ignore-output-1/C1.log
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/mcmc/one-sequence/1/obtained-output
>
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/C1.MAP
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/C1.P1.fastas
>
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/C1.P1.initial.fasta
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/C1.log
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/ignore-output-1/C1.trees
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/mcmc/two-sequences/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/C1.MAP
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/C1.P1.fastas
>
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/C1.P1.initial.fasta
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/C1.log
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/ignore-output-1/C1.trees
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/obtained-error
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/obtained-exit
> bali-phy-3.6.1+dfsg/tests/mcmc/with-imodel/obtained-output
> bali-phy-3.6.1+dfsg/tests/optimizer/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/10/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/10/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/11/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/11/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/12/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/12/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/13/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/13/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/14/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/14/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/15/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/15/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/16/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/16/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/2/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/3/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/4/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/4/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/5/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/5/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/6/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/6/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/7/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/7/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/8/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/8/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/9/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/9/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/eta-reduction/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/eta-reduction/obtained-exit
> bali-phy-3.6.1+dfsg/tests/optimizer/pat-bind/obtained-error
> bali-phy-3.6.1+dfsg/tests/optimizer/pat-bind/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/10/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/10/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/10/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/11/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/11/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/11/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/12/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/12/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/12/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/13/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/13/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/13/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/14/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/14/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/14/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/16/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/16/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/16/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/17/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/17/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/17/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/18/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/18/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/18/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/19/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/19/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/19/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/21/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/21/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/21/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/22/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/22/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/22/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/23/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/23/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/23/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/24/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/24/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/24/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/25/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/25/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/25/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/26/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/26/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/26/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/3/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/3/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/4/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/4/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/4/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/5/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/5/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/5/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/6/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/6/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/6/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/7/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/7/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/7/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/8/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/8/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/8/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/9/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/9/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/9/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/M3/1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/M3/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/M3/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/M3/2/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/M3/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/M3/2/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/constraints/1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/constraints/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/constraints/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/constraints/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/error/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/error/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/error/2/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/error/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/error/3/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/error/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/error/4/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/error/4/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/functions/1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/functions/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/functions/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Codons/dna/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Codons/dna/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Codons/dna/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Codons/rna/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Codons/rna/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Codons/rna/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Triplets/dna/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Triplets/dna/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Triplets/dna/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Triplets/rna/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Triplets/rna/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/Triplets/rna/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/aa/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/aa/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/aa/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/dna/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/dna/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/dna/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/rna/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/rna/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/guess-alphabet/rna/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/2/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/2/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/3/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/int-to-double/3/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/let/1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/let/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/let/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/partitions/1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/partitions/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/partitions/2/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/3/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/partitions/3/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/3/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/partitions/4/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/4/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/2/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/3/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/4/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/4/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/5/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/5/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/6/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/6/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/7/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/7/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/8/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/8/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/9/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/9/obtained-error
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/9/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/partitions/link/9/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/x3/1/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/x3/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/x3/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/x3/2/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/x3/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/x3/2/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/x3/3/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/x3/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/x3/3/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/x3/4/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/x3/4/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/x3/4/obtained-output
> bali-phy-3.6.1+dfsg/tests/parse/x3/5/BAliPhy.Main.hs
> bali-phy-3.6.1+dfsg/tests/parse/x3/5/obtained-exit
> bali-phy-3.6.1+dfsg/tests/parse/x3/5/obtained-output
> bali-phy-3.6.1+dfsg/tests/print/1/Print.Main.hs
> bali-phy-3.6.1+dfsg/tests/print/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/print/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/print/2/Print.Main.hs
> bali-phy-3.6.1+dfsg/tests/print/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/print/2/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/categorical/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/prob_prog/categorical/ignore-output-1/C1.log.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/categorical/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/prob_prog/categorical/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/categorical/obtained-error
> bali-phy-3.6.1+dfsg/tests/prob_prog/categorical/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/categorical/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/2/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/3/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/4/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/4/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/5/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/5/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/6/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/6/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/airline/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/airline/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/coalmine/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/demos/coalmine/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/functions/1/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/prob_prog/functions/1/ignore-output-1/C1.log.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/functions/1/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/prob_prog/functions/1/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/functions/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/prob_prog/functions/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/functions/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/if-then-else/1/ignore-output-1/C1.err
>
> bali-phy-3.6.1+dfsg/tests/prob_prog/if-then-else/1/ignore-output-1/C1.log.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/if-then-else/1/ignore-output-1/C1.out
>
> bali-phy-3.6.1+dfsg/tests/prob_prog/if-then-else/1/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/if-then-else/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/prob_prog/if-then-else/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/if-then-else/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/infer_tree/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/infer_tree/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/lazy_sample/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/lazy_sample/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/lazy_sample/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/lazy_sample/2/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/lazy_sample/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/lazy_sample/3/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/observe/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/observe/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/order-two/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/prob_prog/order-two/ignore-output-1/C1.log.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/order-two/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/prob_prog/order-two/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/order-two/obtained-error
> bali-phy-3.6.1+dfsg/tests/prob_prog/order-two/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/order-two/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/popgen/li_stephens/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/popgen/li_stephens/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/regression/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/prob_prog/regression/ignore-output-1/C1.log.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/regression/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/prob_prog/regression/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/regression/obtained-error
> bali-phy-3.6.1+dfsg/tests/prob_prog/regression/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/regression/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_crp/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_crp/ignore-output-1/C1.log.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_crp/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_crp/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_crp/obtained-error
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_crp/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_crp/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/1/ignore-output-1/C1.err
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/1/ignore-output-1/C1.log.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/1/ignore-output-1/C1.out
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/1/ignore-output-1/C1.run.json
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/1/obtained-error
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/1/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/1/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/2/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/2/obtained-output
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/3/obtained-exit
> bali-phy-3.6.1+dfsg/tests/prob_prog/sample_tree/3/obtained-output
> dpkg-source: error: aborting due to unexpected upstream changes, see
> /tmp/bali-phy_3.6.1+dfsg-1.diff.trS0P7
> dpkg-source: info: Hint: make sure the version in debian/changelog matches
> the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source
> --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/bali-phy_3.6.1+dfsg-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: bali-phy
Source-Version: 4.1+dfsg-1
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
bali-phy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated bali-phy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 10 Feb 2026 10:59:15 +0100
Source: bali-phy
Architecture: source
Version: 4.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1043647 1127170
Changes:
bali-phy (4.1+dfsg-1) unstable; urgency=medium
.
* Team upload.
* d/watch:
- version=5
- Do not report alpha or beta tags
* Drop libboost-system-dev from Build-Depends
Closes: #1127170
* New upstream version
* Standards-Version: 4.7.3 (routine-update)
* Remove Priority field to comply with Debian Policy 4.7.3 (routine-
update)
* Restore original tests dir after running build time test
Closes: #1043647
* Permit failure of blhc in Salsa CI
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