Your message dated Tue, 24 Feb 2026 08:48:55 +0000
with message-id <[email protected]>
and subject line Bug#1108586: fixed in openchemlib 2026.2.2+ds-1
has caused the Debian Bug report #1108586,
regarding openchemlib: FTBFS with default Java 25
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1108586: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1108586
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: openchemlib
Version: 2023.1.1+dfsg-1
Severity: normal
Tags: ftbfs
Usertags: default-java25
Dear Maintainers,
The package openchemlib ftbfs with default Java 25.
The relevant part of the build log:
---------------
[INFO]
[INFO] --- compiler:3.13.0:compile (default-compile) @ openchemlib ---
[INFO] Recompiling the module because of changed source code.
[INFO] Compiling 928 source files with javac [debug target 1.8] to
target/classes
[INFO]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/jfx/gui/misc/ClipboardHelper.java:
Some input files use or override a deprecated API.
[INFO]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/jfx/gui/misc/ClipboardHelper.java:
Recompile with -Xlint:deprecation for details.
[INFO]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/fx/FXComboBox.java:
Some input files use unchecked or unsafe operations.
[INFO]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/fx/FXComboBox.java:
Recompile with -Xlint:unchecked for details.
[INFO] -------------------------------------------------------------
[WARNING] COMPILATION WARNING :
[INFO] -------------------------------------------------------------
[WARNING] bootstrap class path is not set in conjunction with -source 8
not setting the bootstrap class path may lead to class files that cannot run
on JDK 8
--release 8 is recommended instead of -source 8 -target 1.8 because it sets
the bootstrap class path automatically
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/HeaderPaintHelper.java:[41,21]
java.security.AccessControlException in java.security has been deprecated and
marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/util/datamodel/IntVec.java:[1083,40]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[257,43]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[293,91]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[308,45]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[328,75]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java:[329,77]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/editor/GenericEditorArea.java:[2153,84]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/editor/GenericEditorArea.java:[2187,102]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/TextDrawingObject.java:[148,71]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MarkushStructure.java:[135,40]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MarkushStructure.java:[171,44]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/Matrix.java:[644,28]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/Matrix.java:[1393,20]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/Matrix.java:[2810,20]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1110,35]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1110,65]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1117,35]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1117,65]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1121,81]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/MolfileParser.java:[1126,81]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/Molecule3D.java:[386,45]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/Molecule3D.java:[388,45]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/io/DWARFileParser.java:[294,45]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/io/DWARFileParser.java:[352,70]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[300,74]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[302,62]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[302,82]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[304,62]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/prediction/CLogPPredictor.java:[304,82]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/util/SizeOf.java:[58,24]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/util/SizeOf.java:[76,20]
runFinalization() in java.lang.Runtime has been deprecated and marked for
removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/io/StringReadChannel.java:[153,21]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/JDrawArea.java:[2233,84]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/JDrawArea.java:[2268,102]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/properties/complexity/ExhaustiveFragmentsStatistics.java:[284,21]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/properties/complexity/ExhaustiveFragmentsStatistics.java:[293,22]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[628,48]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[755,31]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[757,30]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[763,39]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[771,56]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[772,55]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/ExtendedMoleculeFunctions.java:[773,54]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/StructureSearch.java:[340,66]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/util/BinaryEncoder.java:[158,21]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/SortedPair.java:[62,16]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/SortedPair.java:[62,44]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/AtomTypeList.java:[107,36]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/AtomTypeList.java:[108,31]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/AtomTypeList.java:[262,35]
Long(long) in java.lang.Long has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/PeriodicTable.java:[195,46]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/BinarySOM.java:[78,49]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/MatrixFunctions.java:[644,25]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/calc/MatrixFunctions.java:[645,25]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/smile/stat/distribution/GaussianDistribution.java:[162,25]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/reaction/ReactionSearch.java:[466,66]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/io/ODEFileParser.java:[196,53]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/Vector3.java:[182,16]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/Vector3.java:[183,15]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/forcefield/mmff/Vector3.java:[184,15]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/optimization/Lnsrch.java:[152,45]
Double(double) in java.lang.Double has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/gui/HeaderPaintHelper.java:[52,24]
java.security.AccessControlException in java.security has been deprecated and
marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/UniqueStringList.java:[66,39]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/properties/complexity/MolecularComplexityCalculator.java:[72,21]
finalize() in java.lang.Object has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/src/main/java/com/actelion/research/chem/properties/complexity/MolecularComplexityCalculator.java:[74,22]
finalize() in java.lang.Object has been deprecated and marked for removal
[INFO] 70 warnings
[INFO] -------------------------------------------------------------
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /<<PKGBUILDDIR>>/src/main/java/smile/math/Math.java:[2147,48]
unreported exception java.lang.InterruptedException; must be caught or declared
to be thrown
[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 9.016 s
[INFO] Finished at: 2025-06-11T20:29:02Z
---------------
-- System Information:
Debian Release: trixie/sid
APT prefers plucky-updates
APT policy: (500, 'plucky-updates'), (500, 'plucky-security'), (500, 'plucky')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.14.0-22-generic (SMP w/32 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Source: openchemlib
Source-Version: 2026.2.2+ds-1
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
openchemlib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated openchemlib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 24 Feb 2026 03:28:34 -0500
Source: openchemlib
Architecture: source
Version: 2026.2.2+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers
<[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1108586
Changes:
openchemlib (2026.2.2+ds-1) unstable; urgency=medium
.
* New upstream version 2026.2.2+ds (Closes: #1108586)
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