Your message dated Fri, 27 Feb 2026 10:48:48 +0000
with message-id <[email protected]>
and subject line Bug#1043846: fixed in biomaj3-download 3.2.12-3
has caused the Debian Bug report #1043846,
regarding biomaj3-download: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1043846: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1043846
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: biomaj3-download
Version: 3.2.9-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> ---------------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package biomaj3-download
> dpkg-buildpackage: info: source version 3.2.9-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Olivier Sallou <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean --with python3 --buildsystem=pybuild
> dh_auto_clean -O--buildsystem=pybuild
> I: pybuild base:275: python3.11 setup.py clean
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_biomaj-download/build' (and
> everything under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
> dh_autoreconf_clean -O--buildsystem=pybuild
> dh_clean -O--buildsystem=pybuild
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building biomaj3-download using existing
> ./biomaj3-download_3.2.9.orig.tar.xz
> dpkg-source: warning: file
> biomaj3-download-3.2.9/biomaj_download.egg-info/SOURCES.txt has no final
> newline (either original or modified version)
> dpkg-source: info: local changes detected, the modified files are:
> biomaj3-download-3.2.9/biomaj_download.egg-info/PKG-INFO
> biomaj3-download-3.2.9/biomaj_download.egg-info/SOURCES.txt
> biomaj3-download-3.2.9/biomaj_download.egg-info/dependency_links.txt
> biomaj3-download-3.2.9/biomaj_download.egg-info/requires.txt
> biomaj3-download-3.2.9/biomaj_download.egg-info/top_level.txt
> biomaj3-download-3.2.9/biomaj_download/message/downmessage_pb2.py
> dpkg-source: error: aborting due to unexpected upstream changes, see
> /tmp/biomaj3-download_3.2.9-1.diff.3hrXqu
> dpkg-source: info: Hint: make sure the version in debian/changelog matches
> the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source
> --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/biomaj3-download_3.2.9-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: biomaj3-download
Source-Version: 3.2.12-3
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
biomaj3-download, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated biomaj3-download
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 27 Feb 2026 11:14:17 +0100
Source: biomaj3-download
Architecture: source
Version: 3.2.12-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1043846
Changes:
biomaj3-download (3.2.12-3) unstable; urgency=medium
.
* Team upload.
* d/rules: general readability improvement.
This change drops little boilerplate, tries to shorten line lenght to
digestible width and also ensures that the file which needs being
preserved is restored _before_ the pass of dh_clean, otherwise there
is no .bak file to restore from. (Closes: #1043846)
* d/watch: convert to Github uscan template version 5.
* d/control: drop redundant Priority: optional.
* d/control: drop redundant Rules-Requires-Root: no.
* d/control: declare compliance to standards version 4.7.3.
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biomaj3-download_3.2.12-3.debian.tar.xz
Checksums-Sha256:
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biomaj3-download_3.2.12-3.dsc
c29668a612962500db86734350260816ee31e3d4994022b389d44c13544852b4 14672
biomaj3-download_3.2.12-3.debian.tar.xz
Files:
96a7201aa4deb47d7b16c8c38817e2e9 2668 python optional
biomaj3-download_3.2.12-3.dsc
a18cbe3870dda02ade7b191ff5d9130c 14672 python optional
biomaj3-download_3.2.12-3.debian.tar.xz
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