Your message dated Fri, 06 Mar 2026 10:35:19 +0000
with message-id <[email protected]>
and subject line Bug#1129822: fixed in openstructure 2.11.1-2
has caused the Debian Bug report #1129822,
regarding openstructure: FTBFS with boost 1.90
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1129822: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1129822
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:openstructure
Version: 2.11.1-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202603/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:openstructure, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with python3
dh_clean
debian/rules binary
dh binary --with python3
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON
-DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins
-DENABLE_PARASAIL=ON
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb
PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
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-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu
-DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON
-DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins
-DENABLE_PARASAIL=ON ..
-- The CXX compiler identification is GNU 15.2.0
-- The C compiler identification is GNU 15.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
[... snipped ...]
//whether 3DConnexion devices should be supported
ENABLE_SPNAV:BOOL=OFF
//whether static libraries should be compiled
ENABLE_STATIC:BOOL=OFF
//No help, variable specified on the command line.
FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON
//on gcc, use -fvisibility=hidden
HIDDEN_VISIBILITY:BOOL=OFF
//whether to use the OpenGL Legacy GL implementation
OPENGLPREFERENCE_LEGACY:BOOL=OFF
//No help, variable specified on the command line.
OPEN_MM_PLUGIN_DIR:UNINITIALIZED=/usr/lib/x86_64-linux-gnu/openmm/plugins
//No help, variable specified on the command line.
OPTIMIZE:UNINITIALIZED=ON
//Value Computed by CMake
OpenStructure_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
//Value Computed by CMake
OpenStructure_IS_TOP_LEVEL:STATIC=ON
//Value Computed by CMake
OpenStructure_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>
//whether to compile with profiling support
PROFILE:BOOL=OFF
//workaround for static property bug with some boost/boost_python
// combinations
STATIC_PROPERTY_WORKAROUND:BOOL=OFF
//whether Debian/Ubuntu's lib and libexec directory layout should
// be used
UBUNTU_LAYOUT:BOOL=ON
//whether to compile in double precision
USE_DOUBLE_PRECISION:BOOL=OFF
//embed rpath upon make install
USE_RPATH:BOOL=OFF
//whether to compile with shader support
USE_SHADER:BOOL=OFF
//The directory containing a CMake configuration file for boost_atomic.
boost_atomic_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/boost_atomic-1.90.0
//The directory containing a CMake configuration file for boost_exception.
boost_exception_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/boost_exception-1.90.0
//The directory containing a CMake configuration file for boost_filesystem.
boost_filesystem_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.90.0
//The directory containing a CMake configuration file for boost_headers.
boost_headers_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.90.0
//The directory containing a CMake configuration file for boost_system.
boost_system_DIR:PATH=boost_system_DIR-NOTFOUND
//The directory containing a CMake configuration file for
boost_unit_test_framework.
boost_unit_test_framework_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/boost_unit_test_framework-1.90.0
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//Compiler reason failure
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-DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins
-DENABLE_PARASAIL=ON .. returned exit code 1
make[1]: *** [debian/rules:20: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:17: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: openstructure
Source-Version: 2.11.1-2
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
openstructure, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated openstructure package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 06 Mar 2026 05:17:43 -0500
Source: openstructure
Architecture: source
Version: 2.11.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1129822
Changes:
openstructure (2.11.1-2) unstable; urgency=medium
.
* Remove the code searching for Boost system module in CMakeLists.txt
(Closes: #1129822)
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