Your message dated Wed, 11 Mar 2026 17:33:37 +0000
with message-id <[email protected]>
and subject line Bug#1129889: fixed in orange-spectroscopy 0.9.1-1
has caused the Debian Bug report #1129889,
regarding orange-spectroscopy: FTBFS: 36 failed, 1622 passed, 406 skipped, 192
deselected, 2772 warnings, 2486 subtests passed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1129889: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1129889
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:orange-spectroscopy
Version: 0.8.1+git20250328-5
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202603/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:orange-spectroscopy, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build"
module
I: pybuild base:384: python3.14 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_orange-spectroscopy
* Building wheel...
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning:
Unknown distribution option: 'test_suite'
[... snipped ...]
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/__init__.py:68:
RuntimeWarning: invalid value encountered in cast
return np.round(positions).astype(int), np.isnan(positions)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owhyper.py:652:
RuntimeWarning: Mean of empty slice
np.nanmean(col_df.iloc[i:i+bin_sz,j:j+bin_sz].to_numpy())
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
14 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 14
warnings
/usr/lib/python3/dist-packages/lmfit/jsonutils.py:30: DeprecationWarning:
Please import `gaussian` from the `scipy.signal.windows` namespace; the
`scipy.signal.windows.windows` namespace is deprecated and will be removed in
SciPy 2.0.0.
t = getattr(module, oname, None)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
32 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 32
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 10
warnings
/usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning:
This process (pid=2530) is multi-threaded, use of fork() may lead to deadlocks
in the child.
self.pid = os.fork()
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
/usr/lib/python3/dist-packages/asteval/asteval.py:922: RuntimeWarning:
overflow encountered in exp
out = func(*args, **keywords)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
/usr/lib/python3/dist-packages/asteval/astutils.py:263: RuntimeWarning:
invalid value encountered in scalar subtract
ast.Sub: lambda a, b: a - b,
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
15 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 15
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/peakfit_compute.py:30:
DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of
the numerical integration functions in `scipy.integrate`.
output[col] = np.trapz(np.broadcast_to(comps[comp.prefix], x.shape),
sorted_x)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:49:
UserWarning: _PLSCommonTransform should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(transform)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:85:
UserWarning: PLSProjector should define __eq__ and __hash__ to be used for
compute_value
or set InheritEq = True if inherited methods suffice
return ContinuousVariable(name, compute_value=PLSProjector(transformer, i))
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 20
warnings
/usr/lib/python3/dist-packages/orangewidget/gui.py:2070: UserWarning:
decorate OWPLS.apply with @gui.deferred and then explicitly call apply.now or
apply.deferred.
warnings.warn(
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py:
13 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 13
warnings
/usr/lib/python3/dist-packages/orangewidget/utils/listview.py:119:
DeprecationWarning: ListViewSearch is deprecated and will be removed in
upcoming releases. Use ListViewFilter instead.
warnings.warn(("ListViewSearch is deprecated and will be removed " + "in
upcoming releases. Use ListViewFilter instead."),
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 11
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _PCAReconstructCommon should define __eq__ and __hash__ to be
used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _ShiftAndScaleCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _MNFCommon should define __eq__ and __hash__ to be used for
compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
18 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _XASnormalizationCommon should define __eq__ and __hash__ to be
used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 11 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _ExtractEXAFSCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
/usr/lib/python3/dist-packages/Orange/data/table.py:219: UserWarning: <class
'numpy.ndarray'> must return a column, not 2d array
warnings.warn(err)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/preprocessors/atm_corr.py:108:
RuntimeWarning: All-NaN slice encountered
self.preview_data_max = np.nanmax(spectra_mean(data.X))
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owsnr.py:102:
RuntimeWarning: divide by zero encountered in divide
(bottleneck.nanmean(array, axis=0) /
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
/usr/lib/python3/dist-packages/Orange/data/table.py:2472: RuntimeWarning:
Array contains infinity.
warnings.warn("Array contains infinity.", RuntimeWarning)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py:
15 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py:
15 warnings
/usr/lib/python3/dist-packages/Orange/widgets/gui.py:483: DeprecationWarning:
Argument 'valueType' is deprecated and ignored
warnings.warn("Argument 'valueType' is deprecated and ignored",
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _SpSubtractCommon should define __eq__ and __hash__ to be used
for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97:
RuntimeWarning: divide by zero encountered in divide
transd = data.X / ref_X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestTransmittance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestTransmittance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97:
RuntimeWarning: invalid value encountered in divide
transd = data.X / ref_X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:33:
RuntimeWarning: divide by zero encountered in log10
np.log10(absd, absd)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:38:
RuntimeWarning: divide by zero encountered in log10
absd = np.log10(data.X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32:
RuntimeWarning: divide by zero encountered in divide
absd = ref_X / data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32:
RuntimeWarning: invalid value encountered in divide
absd = ref_X / data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_baseline.py:
1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 11
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _RubberbandBaselineCommon should define __eq__ and __hash__ to be
used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:409:
RuntimeWarning: invalid value encountered in divide
data.X /= norm_data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:427:
RuntimeWarning: invalid value encountered in divide
data.X = data.X / (max - min)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:469:
RuntimeWarning: divide by zero encountered in divide
return replace_infs(data.X / ref_X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52:
UserWarning: _NormalizePhaseReferenceCommon should define __eq__ and __hash__
to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:469:
RuntimeWarning: invalid value encountered in divide
return replace_infs(data.X / ref_X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py::TestOmnicMapReader::test_read
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py::TestOmnicMapReader::test_read
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/pymca5/OmnicMap.py:148:
RuntimeWarning: invalid value encountered in scalar divide
deltaY = (yPositions[-1] - yPositions[0]) / (self.__nFiles - 1)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 6
warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owtilefile.py:121:
DeprecationWarning: 'addSpace' has been deprecated. Use gui.separator instead.
vbox = gui.radioButtons(None, self, "source", box=True, addSpace=True,
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
/usr/lib/python3/dist-packages/extranormal3/normal_xas.py:83: RuntimeWarning:
invalid value encountered in divide
return
numpy.array((spectrum[1]-preedge_fitcurve[1]-flattening)/norm_const), norm_const
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestExtractEXAFS::test_file
/usr/lib/python3/dist-packages/extranormal3/extra_exafs.py:96:
RuntimeWarning: divide by zero encountered in divide
sigma=1./k_interp**kweight
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:97:
RuntimeWarning: invalid value encountered in log10
ab = np.log10(rsc / ssc)
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_multi_ab
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:134:
RuntimeWarning: invalid value encountered in log10
ab = np.log10(rsc / ssc)
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
/usr/lib/python3/dist-packages/_pytest/python.py:170:
PytestReturnNotNoneWarning: Test functions should return None, but
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
returned <class 'numpy.ndarray'>.
Did you mean to use `assert` instead of `return`?
See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for
more information.
warnings.warn(
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py::TestOWFFT::test_calculation
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py:111:
RuntimeWarning: invalid value encountered in log10
calc_abs = np.log10(rsc.X / ssc.X)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
SUBFAILED[data with just nans]
orangecontrib/spectroscopy/tests/test_owalignstack.py::TestOWStackAlign::test_zero_size_data
- Exception: All variables in the domain should have unique names.
SUBFAILED[data with just nans]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: Not setting range to [nan, nan]
SUBFAILED[data without rows]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation minimum which has no
identity
SUBFAILED[data with just class]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just continouos outcome]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just metas]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[with without attributes, class or metas]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just nans]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: Not setting range to [nan, nan]
SUBFAILED[data without rows]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation minimum which has no
identity
SUBFAILED[data with just class]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just continouos outcome]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just metas]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[with without attributes, class or metas]
orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data
- ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data without rows]
orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data
- IndexError: index 0 is out of bounds for axis 0 with size 0
SUBFAILED[data with just class]
orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data
- ValueError: attempt to get argmax of an empty sequence
SUBFAILED[data with just continouos outcome]
orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data
- ValueError: attempt to get argmax of an empty sequence
SUBFAILED[data with just metas]
orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data
- ValueError: attempt to get argmax of an empty sequence
SUBFAILED[with without attributes, class or metas]
orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data
- ValueError: attempt to get argmax of an empty sequence
SUBFAILED[data with just nans]
tests/test_owalignstack.py::TestOWStackAlign::test_zero_size_data - Exception:
All variables in the domain should have unique names.
SUBFAILED[data with just nans]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: Not setting
range to [nan, nan]
SUBFAILED[data without rows]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation minimum which has no identity
SUBFAILED[data with just class]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation fmin which has no identity
SUBFAILED[data with just continouos outcome]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation fmin which has no identity
SUBFAILED[data with just metas]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation fmin which has no identity
SUBFAILED[with without attributes, class or metas]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation fmin which has no identity
SUBFAILED[data with just nans]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: Not setting
range to [nan, nan]
SUBFAILED[data without rows]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation minimum which has no identity
SUBFAILED[data with just class]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation fmin which has no identity
SUBFAILED[data with just continouos outcome]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation fmin which has no identity
SUBFAILED[data with just metas]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation fmin which has no identity
SUBFAILED[with without attributes, class or metas]
tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size
array to reduction operation fmin which has no identity
SUBFAILED[data without rows]
tests/test_owfft.py::TestOWFFT::test_zero_size_data - IndexError: index 0 is
out of bounds for axis 0 with size 0
SUBFAILED[data with just class]
tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to
get argmax of an empty sequence
SUBFAILED[data with just continouos outcome]
tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to
get argmax of an empty sequence
SUBFAILED[data with just metas]
tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to
get argmax of an empty sequence
SUBFAILED[with without attributes, class or metas]
tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to
get argmax of an empty sequence
= 36 failed, 1622 passed, 406 skipped, 192 deselected, 2772 warnings, 2486
subtests passed in 160.29s (0:02:40) =
Widgets left: 0 Max widgets: 9089
E: pybuild pybuild:483: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build; python3.13
-m pytest --verbosity=2 -k "not Mixin"
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14
3.13" returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: orange-spectroscopy
Source-Version: 0.9.1-1
Done: Roland Mas <[email protected]>
We believe that the bug you reported is fixed in the latest version of
orange-spectroscopy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Roland Mas <[email protected]> (supplier of updated orange-spectroscopy
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 11 Mar 2026 17:55:10 +0100
Source: orange-spectroscopy
Architecture: source
Version: 0.9.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian PaN Maintainers
<[email protected]>
Changed-By: Roland Mas <[email protected]>
Closes: 1083524 1129889
Changes:
orange-spectroscopy (0.9.1-1) unstable; urgency=medium
.
* New upstream release. This fixes "FTBFS: 36 failed, 1622 passed, 406
skipped, 192 deselected, 2772 warnings, 2486 subtests passed", thanks to
Santiago Vila (Closes: #1129889).
* Patch out support for pySNOM since it's non-free (Creative Commons
license with a non-commercial clause).
* Bug fix: "(build-)depends on deprecated module python3-pkg-resources",
thanks to Matthias Klose (Closes: #1083524).
Checksums-Sha1:
da15148b3455de0249478eb491d6a00adb188e72 3202 orange-spectroscopy_0.9.1-1.dsc
8fc1bb4999ca2434a12ba4f49f281fc1149f56ec 4351816
orange-spectroscopy_0.9.1.orig.tar.gz
2b6e2f78adeb88d500a1ed76e90fd51ae34dd556 7880
orange-spectroscopy_0.9.1-1.debian.tar.xz
6dfc10b4f57702407ad495379df35d8d7353af11 19294
orange-spectroscopy_0.9.1-1_amd64.buildinfo
Checksums-Sha256:
46ad6f39ee851968d068d01f24db3cab84ab819f4886be902bdab2d01c5bfd28 3202
orange-spectroscopy_0.9.1-1.dsc
c85f314bb48ae4ca913e1954cb58d83fba80bd3504cbcb60f95ab7417b69a55d 4351816
orange-spectroscopy_0.9.1.orig.tar.gz
993e5ef833b63e24ef3f67b70fc303fe88667b1eea790d37947e207d28fc3187 7880
orange-spectroscopy_0.9.1-1.debian.tar.xz
7c5b9949022e10e153c11a1b0ff73d339eabb1a19b765e07a23913845cb5f1b5 19294
orange-spectroscopy_0.9.1-1_amd64.buildinfo
Files:
e1dcaee621dfebee6d1dbd9e3596f435 3202 python optional
orange-spectroscopy_0.9.1-1.dsc
006f44d4b871d977ec76529bac3c0519 4351816 python optional
orange-spectroscopy_0.9.1.orig.tar.gz
06e1afe0b5e857c6c5c2163741e7ff33 7880 python optional
orange-spectroscopy_0.9.1-1.debian.tar.xz
d6f622bd063b36fec6762586ab118d88 19294 python optional
orange-spectroscopy_0.9.1-1_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=G4i0
-----END PGP SIGNATURE-----
pgpZEUkPTOrr0.pgp
Description: PGP signature
--- End Message ---
