Your message dated Sat, 30 May 2026 08:35:22 +0000
with message-id <[email protected]>
and subject line Bug#1136921: fixed in minc-tools 2.3.00+dfsg-17
has caused the Debian Bug report #1136921,
regarding minc-tools: FTBFS: CMake Error at cmake-modules/FindHDF5.cmake:70
(MESSAGE): Could not find HDF5!
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1136921: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1136921
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:minc-tools
Version: 2.3.00+dfsg-16
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202605/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:minc-tools, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure --
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb
PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
CMake Warning (dev) at CMakeLists.txt:6 (PROJECT):
cmake_minimum_required() should be called prior to this top-level project()
call. Please see the cmake-commands(7) manual for usage documentation of
both commands.
[... snipped ...]
CPACK_SOURCE_TXZ:BOOL=ON
//Enable to build TZ source packages
CPACK_SOURCE_TZ:BOOL=ON
//Enable to build ZIP source packages
CPACK_SOURCE_ZIP:BOOL=OFF
//How many times to retry timed-out CTest submissions.
CTEST_SUBMIT_RETRY_COUNT:STRING=3
//How long to wait between timed-out CTest submissions.
CTEST_SUBMIT_RETRY_DELAY:STRING=5
//Maximum time allowed before CTest will kill the test.
DART_TESTING_TIMEOUT:STRING=1500
//No help, variable specified on the command line.
FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON
//HDF5 C include dir (from libminc)
HDF5_C_INCLUDE_DIR:PATH=/usr/include/hdf5/serial
//Not fount hdf5 library
HDF5_FOUND:BOOL=0
//Path to a file.
HDF5_INCLUDE_DIR:PATH=HDF5_INCLUDE_DIR-NOTFOUND
//Path to a library.
HDF5_LIBRARY:FILEPATH=HDF5_LIBRARY-NOTFOUND
//HDF5 C library (from libminc)
HDF5_hdf5_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
//The directory containing a CMake configuration file for LIBMINC.
LIBMINC_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/LIBMINC
//Command to build the project
MAKECOMMAND:STRING=/usr/bin/cmake --build . --config
"${CTEST_CONFIGURATION_TYPE}"
//Path to the memory checking command, used for memory error detection.
MEMORYCHECK_COMMAND:FILEPATH=MEMORYCHECK_COMMAND-NOTFOUND
//File that contains suppressions for the memory checker
MEMORYCHECK_SUPPRESSIONS_FILE:FILEPATH=
//Name of the computer/site where compile is being run
SITE:STRING=sbuild
//Path to a file.
ZLIB_INCLUDE_DIR:PATH=/usr/include
//Path to a library.
ZLIB_LIBRARY_DEBUG:FILEPATH=ZLIB_LIBRARY_DEBUG-NOTFOUND
//Path to a library.
ZLIB_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libz.so
//Value Computed by CMake
minc-tools_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
//Value Computed by CMake
minc-tools_IS_TOP_LEVEL:STATIC=ON
//Value Computed by CMake
minc-tools_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>
########################
# INTERNAL cache entries
########################
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CMAKE_CACHE_MAJOR_VERSION:INTERNAL=4
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dh_auto_configure: error: cd obj-x86_64-linux-gnu &&
DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake
-DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None
-DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
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-DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
returned exit code 1
make[1]: *** [debian/rules:29: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:26: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: minc-tools
Source-Version: 2.3.00+dfsg-17
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
minc-tools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated minc-tools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 30 May 2026 10:06:54 +0200
Source: minc-tools
Architecture: source
Version: 2.3.00+dfsg-17
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1136921
Changes:
minc-tools (2.3.00+dfsg-17) unstable; urgency=medium
.
* Fix CMake patch and adapt to latest CMake
Closes: #1136921
* Standards-Version: 4.7.4 (routine-update)
* debputy lint --auto-fix (routine-update)
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